Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0515 ATGGCATCTGCGGCGCCGGCGACGGGGCGAGAGTTGTCGAATCCTCCATCGGACGGCATCACCAACCTCCGATTCTCGAATCACAGCGATCATCTGCTGGTCTCCTCGTGGGACAAGGGCGTGCGGTTGTATGATGCGAGCGCCAATGTGCTGAGAGGAGAGTTTATGCACGCTGGCCCCGTCCTCGATTGCTGCTTCCACGACGATTCCTCCGGCTTCAGTGCCGCCGCCGACAACACTGTTAGACGGCTTGTCTTCAGCTCTAATAAAGAGGATATTCTGGGAAGGCATGATGCACCTGTTCGTTGTGTTGAGTACTCATATGCCGCAGGGCAATTGATCACCGGTAGCTGGGACAAAACCCTGAAATGTTGGGACCCTAGAGGTGCAAGTGGCCAAGAGCGCACACTCGTTGGGACATATCCACAGCCTGAGCGtgtttactctctctctctggtTGGACATCATCTGGTTGTAGCAACAGCTGGAAGACATGTTAATATCTATGATTTGAGGAACATGTCTCAACCTGAGCAACGAAGAGAATCTTCATTGAAATATCAAACCAGATGTGTGCGCTGTTACCCTAACGGAACAGGATATGCACTTAGTTCTGTTGAAGGGCGGGTTGCAATGGAATTCTTTGACCTCTCAGAGGCTAGCCAAGCAAAAAAATATGCTTTTAAGTGTCATAGAAAATCAGAGGCTGGAAGGGACATCGTCTATCCTGTGAATGCCATTGCATTCCACCCCATATATGGAACTTTTGCCACTGGAGGTTGTGACGGGTATGTTAACGTGTGGGACGGAAACAATAAGAAGAGGCTATACCAgTACTCAAAATATCCTACTAGCATTGCAGCGCTTTCGTTTAGCAGAGATGGACGCCTCTTGGCTGTTGCATCAAGTTACACATTCGAAGAAGGGCCTAAAGCCTACGAACAAGATGCTATCTACGTTCGCAGTGTAAACGAGATTGAGGTCAAGCCGAAGCCCAAAGTCTATCCCAATCCTCCAGCGTGA 1023 0.4868 MASAAPATGRELSNPPSDGITNLRFSNHSDHLLVSSWDKGVRLYDASANVLRGEFMHAGPVLDCCFHDDSSGFSAAADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHHLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGPKAYEQDAIYVRSVNEIEVKPKPKVYPNPPA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0515 340 MobiDBLite consensus disorder prediction 1 20 - -
Ssu7g0515 340 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 5 335 - -
Ssu7g0515 340 SUPERFAMILY WD40 repeat-like 16 303 IPR036322 GO:0005515
Ssu7g0515 340 SMART WD40_4 134 170 IPR001680 GO:0005515
Ssu7g0515 340 SMART WD40_4 221 269 IPR001680 GO:0005515
Ssu7g0515 340 SMART WD40_4 87 126 IPR001680 GO:0005515
Ssu7g0515 340 SMART WD40_4 8 45 IPR001680 GO:0005515
Ssu7g0515 340 SMART WD40_4 48 85 IPR001680 GO:0005515
Ssu7g0515 340 PANTHER MRNA EXPORT FACTOR AND BUB3 5 335 - -
Ssu7g0515 340 Pfam WD domain, G-beta repeat 228 269 IPR001680 GO:0005515
Ssu7g0515 340 Pfam WD domain, G-beta repeat 18 45 IPR001680 GO:0005515
Ssu7g0515 340 Pfam WD domain, G-beta repeat 94 126 IPR001680 GO:0005515
Ssu7g0515 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 126 IPR001680 GO:0005515
Ssu7g0515 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 278 IPR001680 GO:0005515
Ssu7g0515 340 Gene3D - 2 334 IPR015943 GO:0005515
Ssu7g0515 340 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 94 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0515 Ssu-Chr7 9501295 9504346 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0515 74 314 U-box Gene Family AT2G33340 23.673 8.12e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0515 K02180 - gmx:100808389 658.677