Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0513 ATGGCTTTGGAGGCTTTGAATTCTCCAACAGCAGCCACCACTCCCTTCCGTGGCTACGAAGAAGAGGAGGAGGTTGACCTTCACTTCCACGAGCCTTGGGCCAAAAGGAAACGCTCGAAACGACCGCGTTTCGAGACAGAGGAAGAGTACCTCGCTCTTTGCCTCATCATGCTCGCGCAAAGCGGCAACAACAGAAACAGCAACACCGAATCATCTTCGTCACAGTCACTGTCACACAAGGAAGCGTCACCGCCGGTGAAACCAGCTCACACGTGTTCCATTTGCAACAAGGCCTTTCCTTCATACCAAGCACTCGGTGGCCACAAGGCCAGCCACCGCAAGTCCTCCTCCGAAGCCACCGCCACCGCCTCCGCCGCCGCTGCAGCCAACGACAGCGTTTCCGCCTCGACCGTCGCCGGCGGAAGGATGCACGAGTGTTCCATCTGTCACAAGAGTTTCCCTACGGGTCAGGCCCTCGGTGGCCACAAGCGCTGCCACTACGACGGCGGCAACAACCACAGCAACGCCAACCACAGCAGCGGCGTCACTTCCTCCGACGGCGGCGGCGGTGCTGCCTACTCCCACGCCCTCCGTGGGTTTGACCTGAACCTGCCGGCGCCGCTGACGGAGTTCTGGCCGCCGGTGGGGTTCGACTTCAGGAAGAAGAAGGCTGACGGTGGTGAACAAGAGGTGGAGAGCCCGTTGCCGGTAACCGCCAAGAGGCCGCGTTTGTTTTCGGGGGAAGACGATGATGAAACGGCGTAG 765 0.6039 MALEALNSPTAATTPFRGYEEEEEVDLHFHEPWAKRKRSKRPRFETEEEYLALCLIMLAQSGNNRNSNTESSSSQSLSHKEASPPVKPAHTCSICNKAFPSYQALGGHKASHRKSSSEATATASAAAAANDSVSASTVAGGRMHECSICHKSFPTGQALGGHKRCHYDGGNNHSNANHSSGVTSSDGGGGAAYSHALRGFDLNLPAPLTEFWPPVGFDFRKKKADGGEQEVESPLPVTAKRPRLFSGEDDDETA 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0513 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Ssu7g0513 254 MobiDBLite consensus disorder prediction 1 25 - -
Ssu7g0513 254 Gene3D Classic Zinc Finger 87 166 - -
Ssu7g0513 254 MobiDBLite consensus disorder prediction 64 88 - -
Ssu7g0513 254 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 2 246 - -
Ssu7g0513 254 SUPERFAMILY beta-beta-alpha zinc fingers 90 166 IPR036236 -
Ssu7g0513 254 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
Ssu7g0513 254 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Ssu7g0513 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 166 IPR013087 -
Ssu7g0513 254 MobiDBLite consensus disorder prediction 64 81 - -
Ssu7g0513 254 MobiDBLite consensus disorder prediction 219 254 - -
Ssu7g0513 254 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 2 246 IPR044653 GO:0003700
Ssu7g0513 254 SMART c2h2final6 90 112 IPR013087 -
Ssu7g0513 254 SMART c2h2final6 144 166 IPR013087 -
Ssu7g0513 254 Pfam C2H2-type zinc finger 144 168 - -
Ssu7g0513 254 Pfam C2H2-type zinc finger 89 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0513 Ssu-Chr7 9478182 9478946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0513 1 244 C2H2 Transcription Factor Family AT1G27730 43.411 2.50e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g0513 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0513 - - gmx:100806788 373.244