Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0511 atgagcTGCAATGGTTGTCGTGTCCTCCGAAAGGGTTGCAGTGATGACTGCATGCTACGACATTGCCTACTGTGGATAGAGAACCCACAAGGCCAGGCTCGCGCCACACTCTTCGTCGCCAAGTTCTTCGGCCGTGCCACTCTCATGTCTTTTGTTTCCTCCGTACCCGCCAACCAAAGATCCGCTTTGTTTCAGTCACTGCTTTATGAAGCAGTGGGGCGTACTATAAACCCAGTGAATGGAGCAGTGGGGCTGTTGTGGACTGGGAACTGGCACCTCTGCCAAATGGGTGTGGAGAAAGTGCTCCGAGGTGGTGCTGCGTTGACCCCACTCCCTCACTTCTTGGGTGTAGATCAACAACAGCACGTAACGGGTGCGCAGGTTGGAGGTGGAATGTGTCACCAGGCAAAGAAGCAACGTGTGGGGACACCGTCTCAGGAATCCCAGACGTCCACGTTGGGAAGTAGAGCAGAGGATTGTGCTCCTCAAAGTCAAAGGAAGCTTCTTACACTATTCTTCTGA 522 0.5287 MSCNGCRVLRKGCSDDCMLRHCLLWIENPQGQARATLFVAKFFGRATLMSFVSSVPANQRSALFQSLLYEAVGRTINPVNGAVGLLWTGNWHLCQMGVEKVLRGGAALTPLPHFLGVDQQQHVTGAQVGGGMCHQAKKQRVGTPSQESQTSTLGSRAEDCAPQSQRKLLTLFF 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0511 173 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
Ssu7g0511 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 173 - -
Ssu7g0511 173 MobiDBLite consensus disorder prediction 139 159 - -
Ssu7g0511 173 MobiDBLite consensus disorder prediction 137 159 - -
Ssu7g0511 173 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Ssu7g0511 173 PANTHER LOB DOMAIN PROTEIN 1 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0511 Ssu-Chr7 9438902 9440291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0511 1 116 AS2 family AT3G49940 71.552 2.34e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ssu7g0511 LOB 5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0511 - - gmx:100816269 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2564 2 84832039 84832838 Ssu7g0511 7 9438902 9440291 PCT