Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0509 ATGGCATCTGCGGTGCCGGCGACGGGGCGAGAGTTGTCGAATCCTCCATCGGACGGTATCACCAACCTCCGATTCTCGAATCACAGCGATCATCTGCTGGTCTCCTCGTGGGACAAGGGCGTGCGGTTGTATGATGCGAGCGCCAATGTGCTGAGAGGAGAGTTTATGCACGCTGGCCCTGTCCTCGATTGCTGCTTCCACGACGATTCCTCCGGCTTCAGTGCCGCCGCCGACAACACTGTTAGACGGCTTGTCTTCAGCTCTAATAAAGAGGATATTCTGGGAAGGCATGATGCGCCTGTTCGTTGTGTTGAGTACTCATATGCTGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCCTGAAATGTTGGGACCCTAGAGGTGCAAGTGGGCAGGAGCGCACACTAGTTGGGACATATCCACAACCTGAGCGTGTCTACTCTCTCTCACTGGTTGGACATCGTCTGGTTGTAGCAACAGCTGGAAGACATGTTAATATCTATGATTTGAGGAACATGTCTCAACCTGAGCAACGAAGAGAATCTTCATTGAAATATCAAACCAGATGTGTGCGCTGTTACCCTAATGGAACAGGATATGCACTAAGTTCTGTTGAAGGCCGGGTTGCAATGGAATTCTTTGACCTCTCAGAGGCTAGCCAAGCAAAAAAATATGGTACATTTGCCACGGGAGGCTGTGACGGGTATGTTAACGTATGGGACGGAAACAATAAGAAGAGGCTATACCAGTACTCAAAATATCCATCTAGCGTTGCAGCGCTTTCGTTTAGCAGAGATGGACGCCTGTTGGCTGTTGCATCGAGTTACACATTCGAAGAGGGGCCTAAACCCCACGAACAAGATGCTATCTTCGTTCGTAGTGTAAACGAGATTGAGGTCAAGCCGAAACCCAAAGTCTATCCCAATCCTCCAGCTTGA 942 0.4989 MASAVPATGRELSNPPSDGITNLRFSNHSDHLLVSSWDKGVRLYDASANVLRGEFMHAGPVLDCCFHDDSSGFSAAADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPSSVAALSFSRDGRLLAVASSYTFEEGPKPHEQDAIFVRSVNEIEVKPKPKVYPNPPA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0509 313 SUPERFAMILY WD40 repeat-like 15 276 IPR036322 GO:0005515
Ssu7g0509 313 SMART WD40_4 245 280 IPR001680 GO:0005515
Ssu7g0509 313 SMART WD40_4 134 170 IPR001680 GO:0005515
Ssu7g0509 313 SMART WD40_4 87 126 IPR001680 GO:0005515
Ssu7g0509 313 SMART WD40_4 8 45 IPR001680 GO:0005515
Ssu7g0509 313 SMART WD40_4 188 242 IPR001680 GO:0005515
Ssu7g0509 313 SMART WD40_4 48 85 IPR001680 GO:0005515
Ssu7g0509 313 PANTHER MRNA EXPORT FACTOR AND BUB3 4 226 - -
Ssu7g0509 313 PANTHER MRNA EXPORT FACTOR AND BUB3 226 308 - -
Ssu7g0509 313 Gene3D - 3 307 IPR015943 GO:0005515
Ssu7g0509 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 126 IPR001680 GO:0005515
Ssu7g0509 313 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 4 226 - -
Ssu7g0509 313 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 226 308 - -
Ssu7g0509 313 Pfam WD domain, G-beta repeat 94 126 IPR001680 GO:0005515
Ssu7g0509 313 Pfam WD domain, G-beta repeat 18 45 IPR001680 GO:0005515
Ssu7g0509 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 94 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0509 Ssu-Chr7 9428006 9430927 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0509 73 251 Eukaryotic Initiation Factors Gene Family AT2G46280 30.108 2.02e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0509 K02180 - gmx:100808389 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0509 7 9428006 9430927 Ssu7g0509 7 9428006 9430927 ECH