Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0500 ATGCATGGTAGTGCAGTGAGTGAAAATATGGGCGATGCATTGAATGAAGTGCAGCGCAGGGGTGGTGCACTTGCTGTTTCTCCCAAGAGGGACATTGCATTGTTTGAAGGAGACAAAGATTTTGAGCCACACAATGGCATTGAATTTGAATCCCATGAAGCAGCATATTCATTTTATCAGGAATATGCCAAATCTATGGGATTCACCACTTCAATAAAAAACAGCAGACgctcaaagaaaacaaaagaatttattgATGCCAAATTTGCGTGCTCTAGGTATGGAGTTACACCTGAGTCTGACAGTGGGAGCAGTCGAAGACCAAGTGTAAAGAAAACAGATTGCAAAGCTTGCATGCATGTGAAGAGAAAGTCAGATGGAAAGTGGATCATTCATGAATTTATAAAGGAACATAATCATGAACTTTTACCAGCCTTGGCATATCATTTTCGGATTCATAGAAATGTGAAATTAGCtgaaaagaataatattgaTATCTTGCATGCTGTTAGTGAACGCACCAGAAAGATGTATGTTGAAATGTCTAGGCAATCTGGTGGCTGTCAAAACATTGGGTCTCTCTTGGGTGATATAAACCATCAGTTTGACAGAGGCCAGTATTTGGCTTTGGATGAGGGAGATGCCCAAGTTATGCTTGAGTATTTTAAGCATGTACAAAAGGAGAGTCCCAACTTCTTCTATTCTATAGATTTAAATGAAGAGCAGCgcttaagaaatttattttggattGATGCAAAAAGTATCAATGATTATCTCAGCTTTAACGATGTAGTTTCATTTGATACCACTTACATAAAAAGCAATGACAAGTTGCCATTTGCACCTTTTGTTGGAGTGAATCACCACTCTCAACCTATATTGCTCGGATGTGCATTGGTTGCTGATGAGACTAAACCAACATTTGTTTGGTTACTGAAGACATGGCTTAGAGCAATGGGCGGGCAAGCTCCCAAAGTTATAATAACTGATCAAGGCAAAGCCTTGAATACAGCAATTGAAGAAGTCTTTCCAAATGTACAACATTGCTTTTCTCTTTGGCACATACTGGAGAGGATACCTGAAAATCTCTCTTTTGTGATCAAAAGGTTTCCGAACTTCTTGCATAAATTTAACAGGTGCGTTTTTAAATCATGGACAGATGAACAGTTTGACATGAAATGGTGGAAAATGGTCACTAGATGTGAACTCCAAGATGATATATGGTTTCAGTCATTGTATGAGGACAGGAACAAGTGGGTGCCAACTTACATGGGGGATACCTTTTTAGCTGGAATGTCTACACCTCAGCGCTCTGAAAGTATGAATTCTTTCTTTGACAAAtatattcataagaaaattaccCTTAAAGAGTTTGTGAAACAATATGGGATAATTCTTCAGAATAGATATGATGAGGAAGCCATTGCAGATTTTGATACATTGCACAAACAGCCAGCACTTAAATCTCCTTCGCCTTGGGAAAAACAAATGTCAACAGTTTATACACATgcaatatttaagaaatttcaagTTGAAGTTTTGGGTGTAGCTGGCTGTCAATCTAGGATTGAGGCTGGAGATGGAACTATTGCAAAATTTATAGTTCAAGATTATGAGAAGGATGAAGAGTTTTTGGTAACTTGGAACGAGTTGAGCTCAGAGGTATCTTGCTTCTGTCGATTGTTTGAATATAAAGGTTTCCTTTGCAGGCATGCATTGAGCGTTCTTCAACGTTGTGGTTGTTCAAGTGTTCCATCTCATTATATCTTGAAGAGGTGGACCAAAGATGCCAAAATTAAGGAATCGATGGCAGATAGAACAAGAAGGATACAAACTAGGGTGCACCGATATAATGACTTGTGTAAACGAGCTATTGATTTGAGTGAAGAAGGATCATTATCTGAAGAGAGTTACAATGTTGTTTTTCGTGCACTTGTTGATGCCTTGAAGAACTGCGTCGTTGTGAATAATTCTAATAACAATGGTGCAGCAACTAGCAACAATGCCTATGGCCTTCATGAAGCAGAAGAAAATCAGGGTCCTCTTGCTCtgaaaccaaataaaaagaggaaCGCAGCTAGGAAAAGAAAGGCACAAGTAGAGCAGGATGTTATACTTGTTGATGCTCAAGATAGCCTGCAGCAAATGGATAATCTTAGCTCGGATGCAATAACCCTTAATGGATATTATGGTACCCAGCAAAACGTGCAAGGACTGCAGGTACAGTTGAACTTAATGGAGCCGCCTCATGATGGTTACTATGTTAATCAACAGAGCATGCAAGGCCTGGGGCCATTGAATTCTATGGCTCCAAGCCATGATGGGTTTTTTGGAACACAGCAAAGCATTCATGGGCTGGGAGGGCAATTGGAATTTCGTCCAGCAACTACTTTTGGATATAGCCTTCAGGATGAACCTGATCCCCAGTTTCATGGCAACAGTTCAAGAAACACTTAG 2457 0.3822 MHGSAVSENMGDALNEVQRRGGALAVSPKRDIALFEGDKDFEPHNGIEFESHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKRKSDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVEMSRQSGGCQNIGSLLGDINHQFDRGQYLALDEGDAQVMLEYFKHVQKESPNFFYSIDLNEEQRLRNLFWIDAKSINDYLSFNDVVSFDTTYIKSNDKLPFAPFVGVNHHSQPILLGCALVADETKPTFVWLLKTWLRAMGGQAPKVIITDQGKALNTAIEEVFPNVQHCFSLWHILERIPENLSFVIKRFPNFLHKFNRCVFKSWTDEQFDMKWWKMVTRCELQDDIWFQSLYEDRNKWVPTYMGDTFLAGMSTPQRSESMNSFFDKYIHKKITLKEFVKQYGIILQNRYDEEAIADFDTLHKQPALKSPSPWEKQMSTVYTHAIFKKFQVEVLGVAGCQSRIEAGDGTIAKFIVQDYEKDEEFLVTWNELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYILKRWTKDAKIKESMADRTRRIQTRVHRYNDLCKRAIDLSEEGSLSEESYNVVFRALVDALKNCVVVNNSNNNGAATSNNAYGLHEAEENQGPLALKPNKKRNAARKRKAQVEQDVILVDAQDSLQQMDNLSSDAITLNGYYGTQQNVQGLQVQLNLMEPPHDGYYVNQQSMQGLGPLNSMAPSHDGFFGTQQSIHGLGGQLEFRPATTFGYSLQDEPDPQFHGNSSRNT 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0500 818 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 21 733 - -
Ssu7g0500 818 Pfam FAR1 DNA-binding domain 57 144 IPR004330 -
Ssu7g0500 818 MobiDBLite consensus disorder prediction 799 818 - -
Ssu7g0500 818 ProSiteProfiles Zinc finger SWIM-type profile. 544 580 IPR007527 GO:0008270
Ssu7g0500 818 SMART 26again6 555 582 IPR006564 GO:0008270
Ssu7g0500 818 Pfam MULE transposase domain 264 357 IPR018289 -
Ssu7g0500 818 Pfam SWIM zinc finger 546 579 IPR007527 GO:0008270
Ssu7g0500 818 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 21 733 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0500 Ssu-Chr7 9320481 9323585 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu7g0500 MULE 6.5e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0500 - - gmx:100805377 1524.22