Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0497 ATGACGAGCGCTTCGGAGCTTTTCCACTCCAGAAGGCATCGATTGGGACGAAATGCTCTCGATCTAGGGTTCGACACAGAACTCCACGCCGCAGATTCCCTCCGCCGCCACTACCACGTTCGCCGCCTCCGTCACCACCCGGAGCGTGCATCTGATAGAATTGATGGGAGGCATCGCCGGCCTTTCTTAAGTGACAGCTTTGATTCTGAAGAAAATGTAAGAGGTACTCTTAGAGGGGATGCCGGTGAGAGACTACCCGTAGGTGTGGTTCTTGCACGGGCAAGACTCCTTCAGAGGTTGAGAGGGGAGCCTGTTCTATCTGCAAACAGGCAATATGGTATTGGTGGAGATTCAGTGGGTGAGGATCGAGAAAGTGAATCATCAAATGAAGTTCCATCTGGGGCCTCTCTAGTTACTGACTTGACTTCTCAAATGGGAAGCTCCCAGCTCTTGCAAGAACTAAACAAAAAGCCTCCTGGGCTTAGTCAGGAGGCCTTGGACTGTTTGCATCAGGAAGTTTTTAGCAGCAGCGAGATAGGACAGGAGTCCAGGGTACTGCAGGATTGTAGTATATGCTTGGAATCTTTCACAGATGGAGATCAGCTGATACGTTTGCCATGTGGACATAAATTTCACTCTGTTTGCTTGGATCCTTGGATTCGCTGCTGTGGTGACTGTCCATACTGTAGAAGATGTATAGTTGTAAATACTCACTTACCACAACGAGGATGA 732 0.4932 MTSASELFHSRRHRLGRNALDLGFDTELHAADSLRRHYHVRRLRHHPERASDRIDGRHRRPFLSDSFDSEENVRGTLRGDAGERLPVGVVLARARLLQRLRGEPVLSANRQYGIGGDSVGEDRESESSNEVPSGASLVTDLTSQMGSSQLLQELNKKPPGLSQEALDCLHQEVFSSSEIGQESRVLQDCSICLESFTDGDQLIRLPCGHKFHSVCLDPWIRCCGDCPYCRRCIVVNTHLPQRG 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0497 243 CDD RING-H2_PA-TM-RING 188 230 - -
Ssu7g0497 243 SUPERFAMILY RING/U-box 188 237 - -
Ssu7g0497 243 Pfam Ring finger domain 188 230 IPR001841 -
Ssu7g0497 243 MobiDBLite consensus disorder prediction 111 134 - -
Ssu7g0497 243 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Ssu7g0497 243 PANTHER SI:CH211-59O9.10 1 235 - -
Ssu7g0497 243 SMART ring_2 189 229 IPR001841 -
Ssu7g0497 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 234 IPR013083 -
Ssu7g0497 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 235 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0497 1 234 C3H Transcription Factor Family AT1G49850 41.762 4.63e-46 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0497 - - gmx:548042 379.793