Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0496 ATGCTGCGTTCGTGTTACGGCCCTCTCGATTGCTGCTTCCGACGCCGCGCCGACGGGCTTCTCTGGCACACCGACCTGAAGCCCCACGCCTCCGGCGACTTCTCCATCGCCGTCGCTCAGGCCAATTACAGTCTCGAGGATCAGAGCCAAGTGTTCACCTCCCCCTCCGCCACCTACGTCGGCGTCTATGACGGCCACGGCGGCCCCGAAGCTTCCAGATTCGTCAACAAGCGTCTCTTCCCTTATTTGCAcaAATTCGCCACTGAGCAAGGGGGTTTGTCTGTGGATGTGATAAAAAAGGCGTTTAGTGCCACAGAGGAGGAATTCTTGCATTTGGTGAAGCTGTCTTTGCCCATTAGTCCTCAGATTGCTTCCGTGGGGTCCTGTTGCCTTTTTGGTGCAATTTCTAATAATGTGTTGTATGTTGCCAACCTTGGAGACTCCCGAGCTGTTCTTGGCAGGAGGGATATAGGGAGCAAGAAAAGTCCGGTGGTGGCACAGCGCTTGTCAACTGATCATAATGTAGCTGATGAGGAGGTGAGAAGAGAGGTTGAAGCTCTCCATCCCGATGACTCACACATTGTGGTTTATAGCCGCGGAGTTTGGAGGATTAAGGGCATTATACAGGTGTCAAGATCTATTGGTGATGTCTATTTGAAGAGACCTGATTTTTACCGAGACCCTGTTTTTCAGCAATTTGGAAATCCTATTCCTTTGAAGCGTCCTGTAATGACAGCTGAACCATCAATAATTATTAGGGAGATTGAGTCAGAGGATTTATTCTTGATATTTGCATCAGATGGCCTCTGGGAACAATTAAGTGATGAAGCAGCAGTTCAGATAGTTTTCAAATATCCAAGAGCTGGAATTGCCAAGAGACTGGTTAGAGCTGCTCTTCAGGAAGCTgcaaagaagagagaaatgagaTACGATGACATAAAGAAAATTGACAAAGGAATAAGACGACACTTCCATGATGATATCACTGTGATTGTAATCTATCTTGATCACCATGCGGGCTCCTCTAATGGTAGATTTAAGCAAACTACTGTTGGATATACAACTGCCCCTGTTGATATTTTTTCCCTAAATGCGGATGAAGCAGAAAAGAGGATGCTTGGTGCAGTTGCCTAA 1134 0.4647 MLRSCYGPLDCCFRRRADGLLWHTDLKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKRLFPYLHKFATEQGGLSVDVIKKAFSATEEEFLHLVKLSLPISPQIASVGSCCLFGAISNNVLYVANLGDSRAVLGRRDIGSKKSPVVAQRLSTDHNVADEEVRREVEALHPDDSHIVVYSRGVWRIKGIIQVSRSIGDVYLKRPDFYRDPVFQQFGNPIPLKRPVMTAEPSIIIREIESEDLFLIFASDGLWEQLSDEAAVQIVFKYPRAGIAKRLVRAALQEAAKKREMRYDDIKKIDKGIRRHFHDDITVIVIYLDHHAGSSNGRFKQTTVGYTTAPVDIFSLNADEAEKRMLGAVA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0496 377 Pfam Protein phosphatase 2C 54 304 IPR001932 -
Ssu7g0496 377 CDD PP2Cc 46 335 IPR001932 -
Ssu7g0496 377 ProSitePatterns PPM-type phosphatase domain signature. 59 67 IPR000222 GO:0043169
Ssu7g0496 377 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 3 372 - -
Ssu7g0496 377 PANTHER ALPHABET, ISOFORM E-RELATED 3 372 - -
Ssu7g0496 377 ProSiteProfiles PPM-type phosphatase domain profile. 33 335 IPR001932 -
Ssu7g0496 377 SMART PP2C_4 27 333 IPR001932 -
Ssu7g0496 377 SUPERFAMILY PP2C-like 42 337 IPR036457 -
Ssu7g0496 377 Gene3D - 24 344 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0496 Ssu-Chr7 9234217 9236688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0496 16 342 PP2C-type Phosphatase Gene Family AT3G51370 57.612 4.49e-141 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0496 - K01102 gmx:100812137 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0496 7 9234217 9236688 Ssu7g0496 7 9234217 9236688 ECH
Ssu2g2547 2 84609689 84615853 Ssu7g0496 7 9234217 9236688 PCT