Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0484 ATGACTTGCAACCGGCGAGAAAAGCATCCTCTCCGCTCTCCAACCCTCTTCTTTAAGATTATTCTGAATACAAGTCTTCAAGATGGAAAACTTAAGATTCCAAACAAGTTCACTAAGGAATATGGTGCTAATCTGTCAAACCCAGTGTTTCTCAAGCCTGCAGATGGCACTGAATGGAAAGTTTATTGGACCAAACATGATAGTGGTATTTGGTTTCAAAAGGGTTGGAAGAAATTTGCTACATATTACTCCCTGAGTCACGGACATTTGGTGCTGTTTAAATACCAAGAAACATGTCATTTAGAGGTACACATATTTGATCAGAGTGCCCTTGAAATAAGTTATCCCTTCCATggtactaaaaatgaaaatgacaacCTTGACCACATTAGCGATGATTGTGTTGAAATTTTGGATGAGATGACTCCAAGTCACAAGACTGAACTGAAATCAACAACATCATGTCCTCAACCTCGCAAAAAACTAAGGACACGCTCAAGTGGAAATGTTGGACAAAGTTCCAACTTGCCTCGGCATGTACAATTCACAAATGGAGCTATGCAAGAGGCTGACAAGTTTACCTCGAAAAATCCTTTTTTCACATTCAACATAAAGTCAAATCATAAGGGACATTGCAGACCGCGTGTACCAATTGCGTTCGTGTCAAAGTACTTCCATAACAAGCATATTGTGACGttacaatttgaaaagaaattgtgGGATGTAAAATTGATTGGTAACGTTCGACTAAAGTTGTCTAGGGGTTGGGCCCAATTTGCGAAGGAAACTAAGTTGCGAGCTGGAGATAGTTGCGTCTTTGAGCTAATCAACAAAGTGGGTGCAGTGCTTGATGTTCACATTTTTAGGGGCCACCCTTAG 879 0.3879 MTCNRREKHPLRSPTLFFKIILNTSLQDGKLKIPNKFTKEYGANLSNPVFLKPADGTEWKVYWTKHDSGIWFQKGWKKFATYYSLSHGHLVLFKYQETCHLEVHIFDQSALEISYPFHGTKNENDNLDHISDDCVEILDEMTPSHKTELKSTTSCPQPRKKLRTRSSGNVGQSSNLPRHVQFTNGAMQEADKFTSKNPFFTFNIKSNHKGHCRPRVPIAFVSKYFHNKHIVTLQFEKKLWDVKLIGNVRLKLSRGWAQFAKETKLRAGDSCVFELINKVGAVLDVHIFRGHP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0484 292 CDD B3_DNA 16 107 IPR003340 GO:0003677
Ssu7g0484 292 MobiDBLite consensus disorder prediction 147 177 - -
Ssu7g0484 292 ProSiteProfiles B3 DNA-binding domain profile. 199 291 IPR003340 GO:0003677
Ssu7g0484 292 SUPERFAMILY DNA-binding pseudobarrel domain 193 289 IPR015300 -
Ssu7g0484 292 Gene3D - 181 291 IPR015300 -
Ssu7g0484 292 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Ssu7g0484 292 CDD B3_DNA 199 289 IPR003340 GO:0003677
Ssu7g0484 292 Gene3D - 12 110 IPR015300 -
Ssu7g0484 292 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 14 289 - -
Ssu7g0484 292 SMART B3_2 17 109 IPR003340 GO:0003677
Ssu7g0484 292 SMART B3_2 199 291 IPR003340 GO:0003677
Ssu7g0484 292 SUPERFAMILY DNA-binding pseudobarrel domain 14 109 IPR015300 -
Ssu7g0484 292 Pfam B3 DNA binding domain 199 290 IPR003340 GO:0003677
Ssu7g0484 292 Pfam B3 DNA binding domain 17 108 IPR003340 GO:0003677
Ssu7g0484 292 PANTHER B3 DOMAIN-CONTAINING 14 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0484 Ssu-Chr7 9077832 9080298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0484 16 289 B3 DNA Binding Superfamily AT3G18990 27.327 2.82e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu7g0484 B3 1.9e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0484 - - ccaj:109813514 267.7