Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0483 ATGCATCTAGTAGAcgagagaagaagaggaaatcAAAATGGTATAGGGAAGgtaaaatggaaaatgaaagTGACAAGCTCGGAGAAACGCGACAAGCTAAGAAGCGCCATACTGGACCATTTCCCACAAAAGAGGCCCATTGGACACATGGATCGAccccctcctcctcctccttctcgCACTCTCTTTCCCATTCGCTGCGGAGACTACTCTGTTGCTCACACCCACAACTTATTAGCCTCACATTCTGACTATAGTGGCGGATGCTGTGGTGGTGCGTGTTTCGTCAGACCTATGACTAGTCCAACTGGAGAATTGACAAGCCATAACGACGGTACCGCCAAGCGGATGGGAACTGAACAATGTGAATTTACTGAAAAAACACAGATAGGCTCTGAATGTTTAGAGAGGGAACAAAGGGAGCTTGGTACTGGGTTAACCAGTTCTGTTATTGACGAAAAATCTGAACAATGTGGATTGTCTGAAGAAACACAGATAGGCTCTGAATGTTTAGAGAGGGAACAAAGGGAGCTTGGTACTGTGTTGACCAGTTCAgttattgatgaaaaatcaaatcaagtttCTGCCAATGTGGTGGAGAATTCTGTTATTCTATTGCCCGCCCCACCTCAACACGACTTTGAAAAGAGTTGTCAGACTGTAGAAGGTTCATGCCTTCAACAAAGTACCGTTGAACAAGTCTCTGCTCATTTGTCTAATGATCAACCAGAAAACAAATGCCAACCATTGTCTGAAAATGTTCAAAATGAACCTGTAGAATCCATTCCTGCTGTTGTTGTTGACGGCCAAATGCAATCCAGTCCAGCGCAAGTGGACATGAGTTCTGTGAATGAATTGTTGGATCCACCTTCTGGAGATGTTGTGAACAATATTAGTTCCAATTGTTCAGAAAGAATGTCTAGTAGCCCAACTCATTCGCAATTGAGGCGCAGGGGTAAAAGAAGCTCTAAATTATTGAAGAAGTATATGCTAAGGTCATTAGGAAGCAGTGACAGAGCTTTGCGGTCAAGGACAAGAGAAAAACCTAAAGAACCTGAACCAAATAGTAATATGGTTGATGGTAATAATGATGGAGTGAAGAGGAAAAGtgggaggaagaagaaaaagagaagagaggaggGAATTACTGATCAATTTTCTAGAATCAGATCTCacttaagatatttattaaaccGAATAAGCTATGAGAAAAGCTTGATTGATGCGTATTCTGGCGAGGGCTGGAAAGGATACAGCATGGAAAAATTAAAGCCTGAGAAGGAGCTTCAGCGGGCTAAGTCTGAAATTCTTCGAcgcaaattgaaaattagggatcTATTTCGAAATTTGGATTCATTGTGTGCTGAAGGAAAGCTTCCAGAATCTTTGTTTGATTGTGAGGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAATGCCAGTCCAAAGAGTTGAGCactaataatgatataattcTCTGTGATGGTGTTTGTGACCGTGGATTTCATCAGCTCTGCTTGGATCCTCCGTTGTTAACTGAAGACATTCCACCTGGCGATGAGGGTTGGTTATGCCCAGGGTGTGATTGCAAAGACGACTGCATGGACCTTGTTAACGACTCCTTTGGAACAAATCTCTCTATTAGTGACACCTGGGAGAGGGTCTTTCCTGAGGCAGCTGCAGGAAATAATATGGATAACAACTTGGGACTTCCTTCTGATGAttctgatgatgatgattataatCCTAATGGTCCAGAGGATGCGAAAGTTGAAGAAGATGAGTCAAGTTCTGATGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGGTTCACATGAGGATCAATACTTGGGCCTTCCATCTGAAGAGTCTGATGATGGTGATTATGATCCTAATGCTCCAGATGTTGACTGTAAAGTCAATGAAGGAAGTTCAAGCTCTGATTTCACATCTGACTCCGAGGATCTTGCTGCTGCAATGGAGGATAACACGTCCCCTGGACAGGATGGAGACATCATATCTGCATCATCGGACGATGTTAAGTCCTTAAAAAGTTCTAGCAAACAAAAGGGTAAAGTTGGTAAGAAGCTATCTATGGCTGATGAACTGTCATCTTTACTAGAGCCAGATTCTGGCCAAGAGGGTTCCACTCCTGTTTCTGGGAAAAGAAATGTGGAAAGGTTGGACTACAAAAAGCTGTATGATGAGACGTACCACAGTGATACTAGTGATGATGAAGATTGGACTGCCACTGCTACTCCaagtagaaaaaagaaactCACTGGCAATGTGGCTGCAGTGTCACCAAATGGAAATGCTTCAAATAATTCTATGCACACTCCTAAGAGGAATGCCCATCAGAATAAAgttgaaaatacaaataattcaCCTACTAAATCACTTGATGGCTGTGTGAAATCTGGTTCCAGGGATAAAAAGTCTGGATCTTCAGCACACAAAAGGCTAGGAGAAGCTGTAGTTCAGAGACTTCacaaatcttttaaagaaaatcagTATCCAGATCGAACCACAAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTATCAGCAGGTTGCCAAATGGTTTGACAATTCACGTTGGAGCTTCCGGCATTCATCACAAAAGGAAACCAATCCAGGTAGAAATGCTTCACAGCAAGCTACTGACGGCAGAGCTGAAAATGAGGGGGAGAGGGAATGTGAATTAATGTCCCCGGAGGTCAGTGGAGAAAAATCAAAAACCCCAGGCCCTAGAAAAAGGAAGCATTTGTCAGAACCCCAAGCATCTGAAGCATGGCTAAATATCAATGGCTCAGCAACAAGTTCACCAAATGGCAATAAAATGAAGAcaaggaaaaggaaatga 2874 0.3921 MHLVDERRRGNQNGIGKVKWKMKVTSSEKRDKLRSAILDHFPQKRPIGHMDRPPPPPPSRTLFPIRCGDYSVAHTHNLLASHSDYSGGCCGGACFVRPMTSPTGELTSHNDGTAKRMGTEQCEFTEKTQIGSECLEREQRELGTGLTSSVIDEKSEQCGLSEETQIGSECLEREQRELGTVLTSSVIDEKSNQVSANVVENSVILLPAPPQHDFEKSCQTVEGSCLQQSTVEQVSAHLSNDQPENKCQPLSENVQNEPVESIPAVVVDGQMQSSPAQVDMSSVNELLDPPSGDVVNNISSNCSERMSSSPTHSQLRRRGKRSSKLLKKYMLRSLGSSDRALRSRTREKPKEPEPNSNMVDGNNDGVKRKSGRKKKKRREEGITDQFSRIRSHLRYLLNRISYEKSLIDAYSGEGWKGYSMEKLKPEKELQRAKSEILRRKLKIRDLFRNLDSLCAEGKLPESLFDCEGEIDSEDIFCAKCQSKELSTNNDIILCDGVCDRGFHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCMDLVNDSFGTNLSISDTWERVFPEAAAGNNMDNNLGLPSDDSDDDDYNPNGPEDAKVEEDESSSDESEYASASEKLEGSHEDQYLGLPSEESDDGDYDPNAPDVDCKVNEGSSSSDFTSDSEDLAAAMEDNTSPGQDGDIISASSDDVKSLKSSSKQKGKVGKKLSMADELSSLLEPDSGQEGSTPVSGKRNVERLDYKKLYDETYHSDTSDDEDWTATATPSRKKKLTGNVAAVSPNGNASNNSMHTPKRNAHQNKVENTNNSPTKSLDGCVKSGSRDKKSGSSAHKRLGEAVVQRLHKSFKENQYPDRTTKESLAQELGLTYQQVAKWFDNSRWSFRHSSQKETNPGRNASQQATDGRAENEGERECELMSPEVSGEKSKTPGPRKRKHLSEPQASEAWLNINGSATSSPNGNKMKTRKRK 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0483 957 SMART HOX_1 817 879 IPR001356 GO:0003677
Ssu7g0483 957 MobiDBLite consensus disorder prediction 894 909 - -
Ssu7g0483 957 MobiDBLite consensus disorder prediction 641 655 - -
Ssu7g0483 957 MobiDBLite consensus disorder prediction 39 60 - -
Ssu7g0483 957 MobiDBLite consensus disorder prediction 767 805 - -
Ssu7g0483 957 Gene3D - 817 887 - -
Ssu7g0483 957 MobiDBLite consensus disorder prediction 932 949 - -
Ssu7g0483 957 SMART PHD_3 476 529 IPR001965 -
Ssu7g0483 957 MobiDBLite consensus disorder prediction 560 846 - -
Ssu7g0483 957 MobiDBLite consensus disorder prediction 726 755 - -
Ssu7g0483 957 ProSiteProfiles Zinc finger PHD-type profile. 474 531 IPR019787 -
Ssu7g0483 957 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 470 533 IPR013083 -
Ssu7g0483 957 MobiDBLite consensus disorder prediction 807 844 - -
Ssu7g0483 957 PANTHER HOMEOBOX PROTEIN HAT3.1 242 924 - -
Ssu7g0483 957 MobiDBLite consensus disorder prediction 339 354 - -
Ssu7g0483 957 Pfam PHD-finger 476 531 IPR019787 -
Ssu7g0483 957 MobiDBLite consensus disorder prediction 293 313 - -
Ssu7g0483 957 SUPERFAMILY FYVE/PHD zinc finger 466 534 IPR011011 -
Ssu7g0483 957 Pfam Homeodomain 828 871 IPR001356 GO:0003677
Ssu7g0483 957 SUPERFAMILY Homeodomain-like 818 877 IPR009057 -
Ssu7g0483 957 CDD homeodomain 829 876 IPR001356 GO:0003677
Ssu7g0483 957 CDD PHD_PRHA_like 476 528 IPR045876 -
Ssu7g0483 957 MobiDBLite consensus disorder prediction 873 957 - -
Ssu7g0483 957 MobiDBLite consensus disorder prediction 873 893 - -
Ssu7g0483 957 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 242 924 - -
Ssu7g0483 957 MobiDBLite consensus disorder prediction 602 621 - -
Ssu7g0483 957 ProSitePatterns Zinc finger PHD-type signature. 477 528 IPR019786 -
Ssu7g0483 957 MobiDBLite consensus disorder prediction 271 383 - -
Ssu7g0483 957 ProSiteProfiles 'Homeobox' domain profile. 815 875 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0483 Ssu-Chr7 9011854 9024846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0483 316 872 Homeobox Transcription Factor Family AT3G19510 46.271 2.70e-130 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Ssu7g0483 PHD 1.3e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0483 - - gmx:100306715 1343.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0483 7 9011854 9024846 Ssu7g0483 7 9011854 9024846 ECH