Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0429 ATGCTAGGTTCACTACCTATATTGCCTCTCCCTGCTCCTCCTTCTGATGGAAATCTAGGTCCTCTCCCTGAGTCTCAAGTGACTGAGGAGAGGTCCTCTAATGAGGAGCAGAACAAATCAAATTTGGCTTCTGTTCCTGTGCCGGCAACAGTTGCCACCCACACGAGAACAATTGGAATTATACATCCGCCTCCTGACATTAGGACCATTGTTGATAAAACATCCCAGTTTGTGGCTAAAAATGGTCCAGAATTTGAAAAGAGGATTATTGCAAATAACACAGGCAATGTCAAGTTCAATTTCTTGAACTCATCAGATCCCTATCATGCATATTATCAACACCGGTTGTCTGAATTTCGTGCTCAGAATCAGTCTTCAGTGCAGCAACCTCCTTCCCAGCCTGCAGACTTGGTTGTTCCTGAATCAGACCCATCTGCCCCAGCCCCTGATAGCAATGGCATGGCAGCAGCAGAAAAGCCTGATGTTTCTGCCCAGTTTAAACCTGTAAGGAAAGTGCTTGAACCCCCTGAAGCTGAACAGTACACAGTTCGGCTTCCTGAAGGAATTACGGGGGAAGAACTGGATATTATAAAGCTTACCGCACAATTTGTGGCTCGAAATGGGAAATCTTTTTTGACAGGGTTGACAAGTAGGGAAGTTAATAATCCCCAGTTCCATTTTTTGAAACCGACCCATAGTATGTTTACGTTTTTCACTTCCCTTGCGGATGCATATTCAAAGGTTTTGATGCCACCAAAGGGTTTGTCAGAGAAGCTGAAGAAGAGCGTGTCTGATATGACTACTGTCCTTGAAAGGTGTGTGAATAGGCTGGAATGGGAACGTTCACAAGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATAGAACAGGAAAGAATACAAATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAAACGATTGATTTTGCTGATGATGAGGATGAAGAGTTACCTCCTCCAATGACTATTGAGGAGGTTATAAGGAGAAGCAAGATGTCAGCCATGGAAGAAGATATTGTTGAGCCTGGAAAGGAGGTTGAAATGGAAATGGATGAGGAAGAGGCCCAGCTTGTTGAAGAGGGCATGAGAGCTACTAGTTTGGAAGACCATGATGATGGGAAGCAAAATGAAGTCAGGGTTACTGAAGACCCTGAACCACCAATGAGAATTGTTAAGAACTGGAAGAGACCGGAGGAGAGGATTTCTGCAGAAAGAGATTCAACCAAGTTTGTTGTTTCTCCTATCACTGGTGAGCTAATTCCTATTAGTGAAATGTCAGAACATATGCGAATTTCTCTCATTGATCCCAAGtacaaagaacaaaaagaaaggatGTTTGCCAAAATTCGAGAGACAACTTTGGCTGCGGATGATGAAATTTCAAGAAACATTGTTGGACTTGCTCGGACCCGTCCTGATATATTTGGTACTACAGAAGAAGAGGTCTCCAATGCTGTCAAGGCAGAGATTGAGAAGATAAATGATGAGCAACCTAAGCAGGTTATATGGGATGGTCACACTGGTAGCATTGGGCGTACTGCAAACCAAGCCATGTCACAGAATATTGGAAATGAGGATCAAAATGATGCTTCTAATAATGAAGCCAGGAACCTTCTGGGTCCTGCTGCACCTCCTCCGAGACCTGGTATGCCTTCAGTTCGTCCTCTTCCGCCACCACCTGGACTGGCATTGAATCTTCCCCGTATTCCTGTCCAATATTCTGCTCCTCATAGTGGTGCCCTTCCAATTCCTCCACCTAGACCACCAGTTGTTCCCATGATGCCATCTGTTCGGCCTGCTCCTCCTCCTCCAATGCCGATGAATTCTGGACAGCAATCAGTTATGGCCGGCCAACCACCCCTAATGCCTCCATCAATTCCTATGAATAACCAAGGAGTTCCCATACCTCCACCACCAGGATCTCAGTTCACTCCTGTTCCAGTTCCACGACATTTTGTTCCTCTTTCTGTTCCACCATCAGTTATGCCTATGATGCATCCACCACCTTTGCCTCAAGGagtgccaccaccaccacccccaGAGGAGGCTCCTCCCCCACTCCCAGAAGAACCAGAACCAAAGAGGCAGAAGCTTGATGATTCTGCTCTGATCCCTGAAGATCAATTTCTGGCTCAACATCCTGGACCTGTTCGCATCAGTGTATCTGTTCCTACTGTTGATGAAGGAAATCTCAAGGGACAGGTTCTGGAAATTACAGTGCAATCTTTGTCTGAAACTGTTGGTAGTCTGAAGGAAAAAATTGCTGGGGAGATCCAGCTCCCTGCTAATAAGCAGAAATTGAGTGGAAAGCCAGGCTTTCTCAAGGATAATATGTCACTTGCCCATTACAATGTTGGTGGAGGTGAAACACTTACCCTCACCTTAAGGGAGCGTGGTGGTAGAAAGAGATGA 2436 0.4466 MLGSLPILPLPAPPSDGNLGPLPESQVTEERSSNEEQNKSNLASVPVPATVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGPEFEKRIIANNTGNVKFNFLNSSDPYHAYYQHRLSEFRAQNQSSVQQPPSQPADLVVPESDPSAPAPDSNGMAAAEKPDVSAQFKPVRKVLEPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREVNNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGLSEKLKKSVSDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVETIDFADDEDEELPPPMTIEEVIRRSKMSAMEEDIVEPGKEVEMEMDEEEAQLVEEGMRATSLEDHDDGKQNEVRVTEDPEPPMRIVKNWKRPEERISAERDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAADDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKINDEQPKQVIWDGHTGSIGRTANQAMSQNIGNEDQNDASNNEARNLLGPAAPPPRPGMPSVRPLPPPPGLALNLPRIPVQYSAPHSGALPIPPPRPPVVPMMPSVRPAPPPPMPMNSGQQSVMAGQPPLMPPSIPMNNQGVPIPPPPGSQFTPVPVPRHFVPLSVPPSVMPMMHPPPLPQGVPPPPPPEEAPPPLPEEPEPKRQKLDDSALIPEDQFLAQHPGPVRISVSVPTVDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNVGGGETLTLTLRERGGRKR 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0429 811 ProSiteProfiles SURP motif repeat profile. 196 238 IPR000061 GO:0003723|GO:0006396
Ssu7g0429 811 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 7 116 IPR045146 GO:0003723|GO:0045292
Ssu7g0429 811 PRINTS Proline rich extensin signature 676 701 - -
Ssu7g0429 811 PRINTS Proline rich extensin signature 654 671 - -
Ssu7g0429 811 PRINTS Proline rich extensin signature 585 597 - -
Ssu7g0429 811 PRINTS Proline rich extensin signature 551 567 - -
Ssu7g0429 811 PRINTS Proline rich extensin signature 607 628 - -
Ssu7g0429 811 PRINTS Proline rich extensin signature 631 647 - -
Ssu7g0429 811 MobiDBLite consensus disorder prediction 1 47 - -
Ssu7g0429 811 SUPERFAMILY Surp module (SWAP domain) 46 122 IPR035967 GO:0003723|GO:0006396
Ssu7g0429 811 Pfam Ubiquitin family 739 806 IPR000626 GO:0005515
Ssu7g0429 811 Gene3D Surp module 189 247 IPR035967 GO:0003723|GO:0006396
Ssu7g0429 811 MobiDBLite consensus disorder prediction 530 559 - -
Ssu7g0429 811 PANTHER SPLICING FACTOR 3A, PROTEIN 7 116 - -
Ssu7g0429 811 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 162 811 IPR045146 GO:0003723|GO:0045292
Ssu7g0429 811 SMART surpneu2 194 247 IPR000061 GO:0003723|GO:0006396
Ssu7g0429 811 SMART surpneu2 68 121 IPR000061 GO:0003723|GO:0006396
Ssu7g0429 811 PANTHER SPLICING FACTOR 3A, PROTEIN 162 811 - -
Ssu7g0429 811 Pfam Pre-mRNA splicing factor PRP21 like protein 263 477 IPR022030 -
Ssu7g0429 811 Gene3D Surp module 54 127 IPR035967 GO:0003723|GO:0006396
Ssu7g0429 811 Pfam Surp module 194 245 IPR000061 GO:0003723|GO:0006396
Ssu7g0429 811 Pfam Surp module 68 119 IPR000061 GO:0003723|GO:0006396
Ssu7g0429 811 ProSiteProfiles Ubiquitin domain profile. 727 808 IPR000626 GO:0005515
Ssu7g0429 811 SMART ubq_7 732 804 IPR000626 GO:0005515
Ssu7g0429 811 MobiDBLite consensus disorder prediction 672 705 - -
Ssu7g0429 811 SUPERFAMILY Ubiquitin-like 704 809 IPR029071 -
Ssu7g0429 811 CDD Ubl_SF3a120 724 804 IPR035563 -
Ssu7g0429 811 Coils Coil 280 300 - -
Ssu7g0429 811 SUPERFAMILY Surp module (SWAP domain) 172 246 IPR035967 GO:0003723|GO:0006396
Ssu7g0429 811 MobiDBLite consensus disorder prediction 672 694 - -
Ssu7g0429 811 MobiDBLite consensus disorder prediction 122 163 - -
Ssu7g0429 811 Gene3D - 700 810 - -
Ssu7g0429 811 ProSiteProfiles SURP motif repeat profile. 70 112 IPR000061 GO:0003723|GO:0006396
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0429 739 808 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.143 7.42e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0429 K12825 - gmx:100797261 1284.24