Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0418 ATGGGGGATCACTTTGAGTTGCTGGTTGATCGATTGCTTACTGAATCCACATTAGAAGCTGCACTTGAAAGCAGGAATAGGTCAATGCTGGCTGCATCCTCAGCAGGGAATGATGCAAAAATTGATCTCAATTTGATGAAGATGGGTGTGGATGATATCAAATATCCAGGGAAACTGGTAGAATGCAGGATATgtcatgatgatgatgaagattccAATATGGAGACACCCTGCTCTTGTTGTGGTAGTTTGAAGTATGCCCACCGCAGATGTATACAACGATGGTGTAATGAGAAGGGTGACACCACCTGTGAGATATGCCACCAGCAATTCAAGCCTGGCTATACAGCTCCTCCTCCACTATTTCAGTTTGGACGTATTCCAATGAGTTTCAGGGGAAATTGGGAGATTTCACGAAGAGACTTGAATAGTACTCATTTGGTTAGCATGGTCCCCACCGACCAGAACCTTACCAGTTCTAACCTTGATCAGTATTCAGCCTCTGCTCCAGGAAGTTTGATTTGCTGTCGATCAATTGCTGTCATTTTCATGGTTCTTCTGATTTTAAGACACACACTTCCCCTTGTAATTAGTGGAAATAAGGAGTATTCTTTCCCACTCTTTTTGGTACGTTTTGCATAA 642 0.4143 MGDHFELLVDRLLTESTLEAALESRNRSMLAASSAGNDAKIDLNLMKMGVDDIKYPGKLVECRICHDDDEDSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQQFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNLTSSNLDQYSASAPGSLICCRSIAVIFMVLLILRHTLPLVISGNKEYSFPLFLVRFA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0418 213 SMART ringv_2 61 108 IPR011016 GO:0008270
Ssu7g0418 213 CDD RING_CH-C4HC3_MARCH 62 108 - -
Ssu7g0418 213 PANTHER OS01G0121200 PROTEIN 1 210 - -
Ssu7g0418 213 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 210 IPR033275 -
Ssu7g0418 213 SUPERFAMILY RING/U-box 60 112 - -
Ssu7g0418 213 Pfam Protein of unknown function (DUF3675) 113 210 IPR022143 -
Ssu7g0418 213 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Ssu7g0418 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 117 IPR013083 -
Ssu7g0418 213 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0418 Ssu-Chr7 7839333 7840986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0418 61 108 C3H Transcription Factor Family AT2G37950 49.020 5.79e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0418 - - gmx:100792304 417.157