Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0405 atgtcctctGCCAGAAGAGCAAGGTCTGGTTCTGCTTCGCCGGCTAGAGGCCGTCGATCAAGATCCAGGAGAAGTCTTTCCAGGAGTCAAGATTCTGCTGATGCGGAGAATCCTGGAAATAATTTGTATGTTACAGGCTTGTCCACAAGGATAACTGACAGTGATCTTCAGAAGTATTTCAGTAAAGAGGGAAAGGTTGTCGACTGCCACTTGGTAAAAGATCCTCGTACAAAAGAATCTCGTGGATTTGGTTTTGTCACTTTGGAGACTAATGATGATGCTGAGCGCTGTATCAAGTATTTGAACCGCTCTGTTTTTGAAGGTCGGCTGATAACTGTGGAAAAGGCAAAGAGAAATCGTGGCAGGACTCCAACTCCTGGCAGATACCGTGGTTCAAGAGATAAGCGGGGAGAGGGATGGAGACGATCTCGTAGTTACTCACCTAAGCGATGGCAGGATAGAGATCATCATTCAAGGGACCAGCGAGGAAGGTCTCGTTCTCCATACAGTAGAAGGGTGGACGATTGCTCTGACACAGATAGGAGGCGGAGGGATTAG 558 0.4695 MSSARRARSGSASPARGRRSRSRRSLSRSQDSADAENPGNNLYVTGLSTRITDSDLQKYFSKEGKVVDCHLVKDPRTKESRGFGFVTLETNDDAERCIKYLNRSVFEGRLITVEKAKRNRGRTPTPGRYRGSRDKRGEGWRRSRSYSPKRWQDRDHHSRDQRGRSRSPYSRRVDDCSDTDRRRRD 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0405 185 SUPERFAMILY RNA-binding domain, RBD 32 145 IPR035979 GO:0003676
Ssu7g0405 185 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 7 177 - -
Ssu7g0405 185 SMART rrm1_1 41 114 IPR000504 GO:0003723
Ssu7g0405 185 Gene3D - 1 124 IPR012677 -
Ssu7g0405 185 MobiDBLite consensus disorder prediction 31 45 - -
Ssu7g0405 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Ssu7g0405 185 PANTHER OS08G0385900 PROTEIN 7 177 - -
Ssu7g0405 185 CDD RRM_RBMX_like 39 118 - -
Ssu7g0405 185 SMART rrm2_1 41 114 IPR003954 GO:0003676
Ssu7g0405 185 MobiDBLite consensus disorder prediction 116 185 - -
Ssu7g0405 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 111 IPR000504 GO:0003723
Ssu7g0405 185 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0405 Ssu-Chr7 7560477 7563665 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0405 10 122 Eukaryotic Initiation Factors Gene Family AT1G49760 30.088 3.37e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0405 K12897 - gmx:100798472 258.07