Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0389 ATGGGTTTGCAAAACCAATTAAACGACGTGTCGTCGGGTTCGATTCCGCTGCTGGTGTTGGCGCAGATAGCGACGTGCGTGAACTACCTCCGCTCCATGCTCCTGGCTCTGTTGCAGTCTCTGGGTCTGTGCCGATTCCACACCGACCAGATCGTCGACGAGGGGTTCCTCGCCGCCGTCGGATCGGGGCTCGCCGGACTCATCATGCTCTCCGATCAGCTCACCCTGAAGAACCAATTCTGCTACGACGGTGCCGGCGGCGACCACGGGTGCGTGGTGTGCCAGAACAGCTTCGAGGACGGGGACCAGGTCCGCATGCTCCCCTGCCGCCACGTGTTCCACCGCCGCTGCTTCGACGGCTGGCTCCACCACTACAAGTTCAACTGCCCCCTCTGCCGCTCCCCGCTCTTCTCCGACGAGCGCGTGGCCCTCACCGAGCGCCGCCTCGGCCAACAACTCGTCTCTTGGTTCTCCCTTCACTGA 483 0.6315 MGLQNQLNDVSSGSIPLLVLAQIATCVNYLRSMLLALLQSLGLCRFHTDQIVDEGFLAAVGSGLAGLIMLSDQLTLKNQFCYDGAGGDHGCVVCQNSFEDGDQVRMLPCRHVFHRRCFDGWLHHYKFNCPLCRSPLFSDERVALTERRLGQQLVSWFSLH 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0389 160 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Ssu7g0389 160 SMART ring_2 91 132 IPR001841 -
Ssu7g0389 160 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 158 - -
Ssu7g0389 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 158 - -
Ssu7g0389 160 Pfam Ring finger domain 91 133 IPR001841 -
Ssu7g0389 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 142 IPR013083 -
Ssu7g0389 160 SUPERFAMILY RING/U-box 87 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0389 Ssu-Chr7 6888322 6888804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0389 1 160 C3H Transcription Factor Family AT1G15100 49.080 8.22e-46 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0389 K16282 - gmx:100797628 284.263