Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0350 ATGTATGCCATTGGTGGCAGTGCCAACCCTACCATTTTTAGTGAAGGGAACTATTTTATGGCTTCAAATGATTCTGCTGCGAAACAGGTTACCAAGAGGGAAACTACTGAAAAGTGGAATAATTGGAAATGGAGTAGTTTTCAAGATGAATTCTTAAATGGTGCGTATTTTGTGCCATCTGGGTCAAATGAAAGGACTAAAGCAAACATCCCATTAGAAAACCTCCACGAAGGTGTAAACTCAATTGATTTTGGAATTTCTCTTTCTGATGATGAGAATGAGTTCAATGAAACTAAGGTGAATGAAGACACGAAGGAAAAGTCACTTGATGATGGACAAGGTTTGTTGCATAAGCTTAATAATGCAAGAGTCACTTTAACCACCTTGCCTATTATGCTTTTATAG 405 0.3753 MYAIGGSANPTIFSEGNYFMASNDSAAKQVTKRETTEKWNNWKWSSFQDEFLNGAYFVPSGSNERTKANIPLENLHEGVNSIDFGISLSDDENEFNETKVNEDTKEKSLDDGQGLLHKLNNARVTLTTLPIMLL 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0350 134 PANTHER PECTATE LYASE 16-RELATED 1 65 - -
Ssu7g0350 134 PRINTS Pollen allergen Amb family signature 42 66 IPR018082 -
Ssu7g0350 134 PRINTS Pollen allergen Amb family signature 2 21 IPR018082 -
Ssu7g0350 134 SUPERFAMILY Pectin lyase-like 1 62 IPR011050 -
Ssu7g0350 134 Gene3D - 1 80 IPR012334 -
Ssu7g0350 134 PANTHER PECTATE LYASE 18-RELATED 1 65 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0350 Ssu-Chr7 6266082 6267881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0350 1 61 Polysaccharide Lyase AT4G22080 70.492 1.95e-25 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0350 K01728 - gmx:100803229 121.324