Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0346 ATGTACCCTAAGTTGTTCTCGAGGGCCGGTTTAAGTATAAAGCAGCCTAAGCCCTTGCTGGAGCAGAAGCTGGATTGTGAAATGATACTAGGACTCGGACTAGATCGTCAATTGGACTGTCAAACGTTGTACCATATTGCAATTGGTGTTGCTCGAGGACTAGAATACCTGCATAAAGGTTGCAATACTAGAATTTTACATTTTGACATAAAACCTCATAACATTCTCTTGGATGAGAATTTCAACCCCAAGATTTCAGATTTTGGTCTAGCAAAAATTTGcacaagaaaagaaagtatGTTATCAATATTTGGTGCTAGAGGAACTGCAGGCTATATTGCCCCAGAAGTTTTTTCCAGGAATTTTGGTGCAGTATCACATAAGTCAGATGTTTATAGTTATGGAATGATGGTCTTAGAAATGGttggaatgaaaaataatattaaggcTGAAGTAAATTGCTcgagtgaaatatatttttctcattggaTTTACAATCGTCTTGAATCAAATCAGGAGCTTGGTTTACAGAATATAAGAAGTGAAAGTGATGACAAAATAGTGAGAAAGATGACAATAGTAGGCTTATGGTGCATACAAATCCACCCTTCAACTCGACCAGCCATAAGTAAAGTGGTGGAAATGCTAGAAAGCAAAGTTGAGTTATTGCAAATTCCACCAAAACCTATTTTGTCTTCTCCTTCAACCTCTCCCGTCCATTTAACATGTGAGTCTAAGACATTGTAA 747 0.3467 MYPKLFSRAGLSIKQPKPLLEQKLDCEMILGLGLDRQLDCQTLYHIAIGVARGLEYLHKGCNTRILHFDIKPHNILLDENFNPKISDFGLAKICTRKESMLSIFGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMMVLEMVGMKNNIKAEVNCSSEIYFSHWIYNRLESNQELGLQNIRSESDDKIVRKMTIVGLWCIQIHPSTRPAISKVVEMLESKVELLQIPPKPILSSPSTSPVHLTCESKTL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0346 248 ProSitePatterns Serine/Threonine protein kinases active-site signature. 65 77 IPR008271 GO:0004672|GO:0006468
Ssu7g0346 248 ProSiteProfiles Protein kinase domain profile. 1 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0346 248 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 34 243 - -
Ssu7g0346 248 Pfam Protein kinase domain 40 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0346 248 SMART serkin_6 2 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0346 248 PANTHER RUST RESISTANCE KINASE LR10-RELATED 34 243 IPR045874 GO:0004672
Ssu7g0346 248 Gene3D Transferase(Phosphotransferase) domain 1 27 232 - -
Ssu7g0346 248 SUPERFAMILY Protein kinase-like (PK-like) 36 217 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0346 Ssu-Chr7 6111561 6115581 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0346 34 232 Receptor kinase-like Gene Family AT4G18250 57.073 2.47e-77 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Ssu7g0346 Pkinase 1.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0346 - - gmx:100786495 397.512