Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0345 ATGTTTTTGGCTTGGTGCGTTAGAAGACGCTTTTACAGCAAGAAAAACCCCACCCACCAAATAATTGAGATGTTTTTGAACAACCATGGTCACCTTGCAGCCAAAAGATACAGTTATTCAGAGATAAAGAAAGCCACCAACTCCTTCAGAAACAAATTGGGTCAAGGAGGATATGGTAGCGTATACAAGGGGAAGTTACATGATGGAAGCCTTGTGGCAGTAAAAGTTTTAAGCGACTCCAAAGGTAACGGTGAGGAATTCATCAATGAAGTTGCTAGTATCAGTGTCACTTCTCATGTTAACATTGTTAGTTTACTGGGATTCTGTCTGGAAGGTTCTAAAAGAGCTCTAATATATAAGTACATGCCTAATGGGTCACTTGAGAAGTTCATATATGAAGATAAGGATCCATTAAAGCTCAATCTTCAATTAAGGTGCAAAACCATCTACGATATTGCAATTGGCGTTGCTCGAGGATTAGAGTATTTGCACAGGGGATGCAATACTAAAATCTTGCATTTAGATATAAAACCTCACAATATATTGCTAGATGAGGATTTCTGTCCAAAGATTTCTGATTTTGGACTTGCTAAAATATGTCCAAAAAAGGAAAGTATTGTATCCTTATTGGGAACCAGGGGGACTGCGGGATACATTGCTCCTGAGGTATTCTCTAGAAATTTTGGAGGGGTCTCTCATAAATCTGATGTGTACAGCTATGGAATGATGGTTTTAGAAATGGTTGGGGGAAGAATGAATACCAATGTTGAAGTTGAATGCTCAagtgaaatatattttccaCACTGGATTTACAAGCGTCTTGAACTTAATCAGGAGCCTAGATTGCAAAGCATACAAAATGAAAGTGATAAAGAAATGGTACGAAAGTTGATTATAGTGAGCTTATGGTGCATCCAGACAGACCCGTCAAATAGGCCAGCAATGAGTAAAGTGGTAGATATGATGGAAGGAAGCTTGGAGTCCTTGCAAATACCGccaaaaccttttctttcttcaccTCCTAGGTATCCCCCAAGATCATCAGATCACAACACACACACGTCTCAGACTACGTATCCTTCAGAGTACTAG 1092 0.381 MFLAWCVRRRFYSKKNPTHQIIEMFLNNHGHLAAKRYSYSEIKKATNSFRNKLGQGGYGSVYKGKLHDGSLVAVKVLSDSKGNGEEFINEVASISVTSHVNIVSLLGFCLEGSKRALIYKYMPNGSLEKFIYEDKDPLKLNLQLRCKTIYDIAIGVARGLEYLHRGCNTKILHLDIKPHNILLDEDFCPKISDFGLAKICPKKESIVSLLGTRGTAGYIAPEVFSRNFGGVSHKSDVYSYGMMVLEMVGGRMNTNVEVECSSEIYFPHWIYKRLELNQEPRLQSIQNESDKEMVRKLIIVSLWCIQTDPSNRPAMSKVVDMMEGSLESLQIPPKPFLSSPPRYPPRSSDHNTHTSQTTYPSEY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0345 363 Pfam Protein kinase domain 51 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0345 363 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 362 IPR045874 GO:0004672
Ssu7g0345 363 SUPERFAMILY Protein kinase-like (PK-like) 28 322 IPR011009 -
Ssu7g0345 363 SMART serkin_6 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0345 363 ProSiteProfiles Protein kinase domain profile. 47 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0345 363 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Ssu7g0345 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Ssu7g0345 363 MobiDBLite consensus disorder prediction 330 363 - -
Ssu7g0345 363 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 362 - -
Ssu7g0345 363 MobiDBLite consensus disorder prediction 344 363 - -
Ssu7g0345 363 Gene3D Phosphorylase Kinase; domain 1 24 121 - -
Ssu7g0345 363 Gene3D Transferase(Phosphotransferase) domain 1 122 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0345 Ssu-Chr7 5941689 5942780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0345 1 338 Receptor kinase-like Gene Family AT4G18250 56.069 5.09e-131 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Ssu7g0345 Pkinase 6.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0345 - - gmx:100785979 673.315