Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0338 ATGGACACCCAACTTGACTACAAGACTAAAAGACCAAAACCCACTTCCCCAACGCGCTTGAAGCTCTTTGGGTTCAGCGTCCATGAAGACACCATGGAAGAAGACGAGGTGGTGGTGCATGATGGCGTGGCAGACTCAACCGCCAAGGCCACTTCCACTTCCCCTTCCCCGTCCGGCTCGCCGGACTCCGCCGGTTCCGGACCTCCATCCTCCGGCGACCGGAAATACGAGTGCCAGTACTGTTGCCGAGAGTTCGCAAATTCACAAGCACTTGGTGGGCACCAGAACGCGCACAAGAAAGAGCGTCAACAACTCAAGCGCGCGCAGCTACAGGCCACACGAAACGCTGCCGTTTCGTTCGTGCGGAACCCGATGATCTCCGCCTTCGCCCCTACGCCGCACCTGCTGGCTCCGCCGGGGTCCGTGGTGGTCCCGGCGGCGGCGCCCTCGTGGGTGTACGTGCAGCCACGTGCCGGGCCTCCTCCCTTCCACGTGTCAGTGTCGCACGGGTGTGCGTTCCCGTCGTCGGCGAGTGGCAACGGCATGAGTAGTAATAATAGCAACGTCGCCATAACGGGTGTGAAATCAGCGGGTGCAGGGATGTTTCCCTGTGTTGGCGCTGTAGGAGATTCGTCATTAGCTTTGTCAACGGTGCAGGTTCAGGCCCGGGCCCACCATGCTAGGATTGATGGGTCCTCTTTGAGTAGGTTCTCCAAAGGGGAAGGTGGGCCCAAATTTGATGATGCATGGGGCTTGGACTTGCACCTTAGCCTTGCACCAGCTGCGCCGTGA 792 0.5972 MDTQLDYKTKRPKPTSPTRLKLFGFSVHEDTMEEDEVVVHDGVADSTAKATSTSPSPSGSPDSAGSGPPSSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFVRNPMISAFAPTPHLLAPPGSVVVPAAAPSWVYVQPRAGPPPFHVSVSHGCAFPSSASGNGMSSNNSNVAITGVKSAGAGMFPCVGAVGDSSLALSTVQVQARAHHARIDGSSLSRFSKGEGGPKFDDAWGLDLHLSLAPAAP 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0338 263 MobiDBLite consensus disorder prediction 46 67 - -
Ssu7g0338 263 SUPERFAMILY beta-beta-alpha zinc fingers 72 103 IPR036236 -
Ssu7g0338 263 MobiDBLite consensus disorder prediction 34 71 - -
Ssu7g0338 263 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Ssu7g0338 263 PANTHER ZINC FINGER PROTEIN 5 13 263 IPR044299 GO:0010090
Ssu7g0338 263 Gene3D Classic Zinc Finger 64 124 - -
Ssu7g0338 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Ssu7g0338 263 PANTHER ZINC FINGER PROTEIN GIS3 13 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0338 Ssu-Chr7 5844172 5844963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0338 4 261 C2H2 Transcription Factor Family AT1G68360 44.444 1.00e-50 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0338 - - gmx:102663095 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0338 7 5844172 5844963 Ssu7g0338 7 5844172 5844963 ECH