Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0282 ATGCTCCCCATCACCTGCATTCTTTTAATGTGCCTTCTCGGTTCATTGTCACTCCCAGTCAAAGCTGTTCTCAACCTCACCGTACCCCACCACCAGCCTCACCCCGAAACCGTCGTCCACGAACTTCAACGGAAGGTGAATGCCTCGCTATGGAGAAGGCAAATGCTGGCGAAGGACCAGGCCGCGTGTCTCACCGGAAACCCCATCGACGACTGCTGGCGGTGCGACCCGAACTGGGCGGCGAACCGGCAGAAGCTGGCGGACTGCGGCGTCGGGTTCGGCCAAGACGCCATGGGCGGGAAGGGCGGTCAGATCTACGTGGTGACGGACTCCTCCGACGGGGACCCGGCGAACCCCGTCCCCGGCACCCTCCGGCACGCCGTGATCCAGGACGAGCCACTCTGGATCGTGTTCGCCGCCGACATGACCGTGACCCTAAAGCACGAGCTCATCTTCAACAGCTACAAGACCGTGGACGGCCGCGGCGCCAACGTGCAGGTCACGGGCCACGGCTGCATCACGCTCCAGTACGTGTCCAACGTCATCATCCACAACATCCACGTGCACCACTGCACGCCCTCCGGGAACACCAACATACGCGCGAGCCCGACGCACGTGGGGTGGAGGGGCAGATCGGACGGCGACGGGATCTCCATCTTCGGCTCCCGGAAGATCTGGATCGACCACTGCTCCCTCTCGTACTGCACCGACGGCCTCATCGACGCCATCATGGGGTCCACCGGGATCACCATCTCCAACAACCACTTCGCGCACCACGACGAGGTCATGCTCTTGGGACACGACGACAGGTACTCGCCGGACAGGAGCATGCAGGTCACCATTGCGTTTAATCACTTCGGGGAGGGTTTGGTGCAGCGCATGCCACGCTGCAGGCTCGGATATATCCACGTGGTCAACAATGACTTCACGCAGTGGCAGATGTATGCTATCGGCGGTAGCGCTAACCCTACCATTAACAGCCAGGGGAACCGTTACACTGCTCCCTCTGACCCCGATGCTAAGGAGGTGACGAAGCGCGTGGACACGAACGACAGAGAGTGGAGTGGTTGGAATTGGAGGACAGAAGGGGACATAATGGTAAATGGAGCGTTTTTTGTGCCGTCGGGTGCTGGGCTCAGTGCTCAGTACGCAGAGGCCACCAGTGTGCAACCCAAGTCCGCCGTGCAAATTGACCAACTCACCATGTACTCTGGTGTTTTCGGTGATCCCagGGATAATGGGAATTTATATCCCGGTTTCAACGGTGGTGGGACCGTGACCGGAGCCACCAGCAAAGGCAACAATGAGGGGTCCAGCAGTGACGATGGGGACTTCTTCGGAATGATATTCAAAGGTAGCAGCAGCCAAGCAGCGCCACCATCACCCTCTTCGTCCATTGTATTTGTTTCAacctttttgtctcttttaattattttcattttggacACAACCGCCAACCATGCCATTCTATTATCATTACTATGA 1485 0.5731 MLPITCILLMCLLGSLSLPVKAVLNLTVPHHQPHPETVVHELQRKVNASLWRRQMLAKDQAACLTGNPIDDCWRCDPNWAANRQKLADCGVGFGQDAMGGKGGQIYVVTDSSDGDPANPVPGTLRHAVIQDEPLWIVFAADMTVTLKHELIFNSYKTVDGRGANVQVTGHGCITLQYVSNVIIHNIHVHHCTPSGNTNIRASPTHVGWRGRSDGDGISIFGSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNNHFAHHDEVMLLGHDDRYSPDRSMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPSDPDAKEVTKRVDTNDREWSGWNWRTEGDIMVNGAFFVPSGAGLSAQYAEATSVQPKSAVQIDQLTMYSGVFGDPRDNGNLYPGFNGGGTVTGATSKGNNEGSSSDDGDFFGMIFKGSSSQAAPPSPSSSIVFVSTFLSLLIIFILDTTANHAILLSLL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0282 494 Gene3D - 66 408 IPR012334 -
Ssu7g0282 494 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Ssu7g0282 494 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Ssu7g0282 494 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Ssu7g0282 494 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Ssu7g0282 494 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Ssu7g0282 494 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Ssu7g0282 494 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Ssu7g0282 494 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Ssu7g0282 494 SUPERFAMILY Pectin lyase-like 67 387 IPR011050 -
Ssu7g0282 494 Pfam Pectate lyase 148 330 IPR002022 -
Ssu7g0282 494 PANTHER PECTATE LYASE 8 428 - -
Ssu7g0282 494 PANTHER PECTATE LYASE 18-RELATED 8 428 IPR045032 GO:0030570
Ssu7g0282 494 SMART amb_all 141 338 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0282 Ssu-Chr7 4637511 4641944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0282 1 483 Polysaccharide Lyase AT3G53190 63.360 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0282 K01728 - gmx:100808438 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0282 7 4637511 4641944 Ssu7g0282 7 4637511 4641944 ECH