Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0253 ATGTGGGTTTTCCAGAATTCTGATTCAGTTGTGAGGTTCAAGGAGAGAAAAACACTCCCAGGTGAAGCAGAAGAAGATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTGGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAACACGGTGAGAAGAAGTGGAAGTGTGACAAATGCTCAAAGAAGTATGCTGTTCAATCGGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAGAGAATACAGATGTGACTGTGGCACCCTCTTCTCCAGGCGAGACAGTTTCATCACCCACAGGGCGTTCTGCGATGCACTGGCTCAAGAGAGTGCAAGGCAACCCCCAAACCCAAACCTTAGCGGCGGCATAGGCAGCCACCTATACGGCACCACCAACATGGCTTTAAACCTATCTCAGGTGGGTTCTCAGATCTCAAACATGCAAGACCAACCAACCGAACTGCTCCGCCTCGGCGCCGCCGCCGGCCGAACCGACCACATCCTCGGTTCACCCTTCCGAACCTCACAGCAACAAGCCTTCTTCATCCCCGAACCGAACCAAAACTACCACCCCGACCAACACCAACAACAAGCCATGGTCCAAAACAAACCGTTCCAACAAGGATTAATGCAATTGTCTGATCACCTCAATAACAATTCCTCGTTCAACCTTCCCTTCCTTTCGAGCAACGCCTCCTTCTCTGAACACTTCAACATGAATGGAAACAACAACGAGGGCACCAACTTCTTCACAACCTCGAGCGCCCCTTCCCTCTTCAGCACCTCTTCTCTCCAAAGCAACAGCAACAGTGGCAATGCCGTCTCTCACATGTCCGCAACCGCGCTGCTTCAGAAAGCCGCACAAATGGGTGCAACTTCGAGCAACAGCACCGCTTCGCTGTTGAAAAGCTTCGGAAGCGCGTCCTCCAGCAGCGGGTCAAAATCTGAGCACAGGCCACTGGTTGCTGCCGCAAACTACGGCGGCATCTTCGGAGGGAACGTCAACGAACAAAGTAATAGTAACCTTCAGGACCTGATGATAAGCTCGTTTGCTGTCGCTGGAAACTCTTCCATTTTCGAAGGTGGGTCCTCCGTGACGGGGTTTGAAGCATATGATCATAAAAGTGGTAGGGACCCGAAAGTGCTCGCAATTGGAGGGTCTGATAGGCTCACCCGCGATTTTCTGGGCGTGGGTCAGATAGTGAGAAGCATCGGTGGGAGTGGAGGGGTTTCGCAGAGAGAGCAACAGCAACATGGCTTCAACTTGACTTCTTTGGAGgcagaaagaaataataataataataacaataatgctGCGCCGTCAGGGCAATCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 1560 0.5019 MWVFQNSDSVVRFKERKTLPGEAEEDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNPNLSGGIGSHLYGTTNMALNLSQVGSQISNMQDQPTELLRLGAAAGRTDHILGSPFRTSQQQAFFIPEPNQNYHPDQHQQQAMVQNKPFQQGLMQLSDHLNNNSSFNLPFLSSNASFSEHFNMNGNNNEGTNFFTTSSAPSLFSTSSLQSNSNSGNAVSHMSATALLQKAAQMGATSSNSTASLLKSFGSASSSSGSKSEHRPLVAAANYGGIFGGNVNEQSNSNLQDLMISSFAVAGNSSIFEGGSSVTGFEAYDHKSGRDPKVLAIGGSDRLTRDFLGVGQIVRSIGGSGGVSQREQQQHGFNLTSLEAERNNNNNNNNAAPSGQSFGGGGGNFQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0253 519 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 481 - -
Ssu7g0253 519 SMART c2h2final6 121 141 IPR013087 -
Ssu7g0253 519 SMART c2h2final6 86 116 IPR013087 -
Ssu7g0253 519 SMART c2h2final6 45 67 IPR013087 -
Ssu7g0253 519 Pfam Zinc-finger double-stranded RNA-binding 45 67 IPR022755 -
Ssu7g0253 519 Gene3D Classic Zinc Finger 23 93 - -
Ssu7g0253 519 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 13 481 - -
Ssu7g0253 519 SUPERFAMILY beta-beta-alpha zinc fingers 44 141 IPR036236 -
Ssu7g0253 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 67 IPR013087 -
Ssu7g0253 519 MobiDBLite consensus disorder prediction 493 519 - -
Ssu7g0253 519 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Ssu7g0253 519 Gene3D Classic Zinc Finger 99 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0253 Ssu-Chr7 4250435 4254976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0253 28 475 IDZ Gene Family AT2G02070 49.427 1.02e-126 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g0253 zf-C2H2_jaz 3.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0253 K25870 - gmx:100786121 642.884