Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0242 ATGGCTGCTCAACGTCAGGGAGTGAATGCTATGCTGCCTATCCGTTTCTTCAAGATTATTCTTAAAACTAATCTTGAAAGGCTTAAAATACCCAATAAGTTCGTAAGGAAATATGGAGATGGCTTGCCAAATCCATTGTTTATGAAGCCTCCGGATGGCACTGAATGGGAAGTGTATTGGGCAAAACAGAATGGGGAGGTTTGGTTCGAAAAAGGTTGGAAAGAATTTGTTGAGCATTATTCCCTGGATCAAGGACATTTGGTTTTCTTTAAATATGAAGGGATTTCCAAGATTGATGTATTCATACTTGACCAAAGTGCTATAGAAATAGACTATCCTTCTTGTGACACTTGTGATGAAAAGGACAACCTTGATCATAGCGATGATGAAtccgttaaaattttggatgaaaGGCCTGACGAGAAGCCTAAACAAATGAGAGGTGAGAAGCCTGCTCAAAGAACTTCATCATTGAATTGGCCAACGCAAACAAGAGCACAGGAAATTGCTAGAAATTTCATCTCATACAATCCTTTTTTCACGGTTTTCATAAAGCCTACTCATGTGGCAAAAATTCATTTGCCTGTACCAGATTTGGAAGGCATTATTGAGAACAAGGAGAAGTATGTGACGCTGCAGCTTGGGGAAAGGTCATGGAATGTGAAGTTGCTCAGTTGTAACTCCCTCTGTGCTGGTTGGCCCTTGTTTGCAAGGGAAAGTAAATTGCAAGCAGGAGACGTTTGTGTATTTGAACTGATTAGCAGGGAGGATTCTGTTTTTGAAGTTCATGTTTTCAAATGGCACAGTTAA 810 0.3926 MAAQRQGVNAMLPIRFFKIILKTNLERLKIPNKFVRKYGDGLPNPLFMKPPDGTEWEVYWAKQNGEVWFEKGWKEFVEHYSLDQGHLVFFKYEGISKIDVFILDQSAIEIDYPSCDTCDEKDNLDHSDDESVKILDERPDEKPKQMRGEKPAQRTSSLNWPTQTRAQEIARNFISYNPFFTVFIKPTHVAKIHLPVPDLEGIIENKEKYVTLQLGERSWNVKLLSCNSLCAGWPLFARESKLQAGDVCVFELISREDSVFEVHVFKWHS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0242 269 MobiDBLite consensus disorder prediction 122 149 - -
Ssu7g0242 269 MobiDBLite consensus disorder prediction 122 157 - -
Ssu7g0242 269 SUPERFAMILY DNA-binding pseudobarrel domain 15 113 IPR015300 -
Ssu7g0242 269 Gene3D - 12 107 IPR015300 -
Ssu7g0242 269 Gene3D - 161 268 IPR015300 -
Ssu7g0242 269 SMART B3_2 16 106 IPR003340 GO:0003677
Ssu7g0242 269 SMART B3_2 180 266 IPR003340 GO:0003677
Ssu7g0242 269 CDD B3_DNA 178 266 IPR003340 GO:0003677
Ssu7g0242 269 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 266 - -
Ssu7g0242 269 CDD B3_DNA 15 104 IPR003340 GO:0003677
Ssu7g0242 269 ProSiteProfiles B3 DNA-binding domain profile. 217 268 IPR003340 GO:0003677
Ssu7g0242 269 SUPERFAMILY DNA-binding pseudobarrel domain 177 267 IPR015300 -
Ssu7g0242 269 Pfam B3 DNA binding domain 23 94 IPR003340 GO:0003677
Ssu7g0242 269 Pfam B3 DNA binding domain 179 265 IPR003340 GO:0003677
Ssu7g0242 269 PANTHER B3 DOMAIN-CONTAINING 13 266 - -
Ssu7g0242 269 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0242 Ssu-Chr7 4000766 4002165 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0242 15 131 B3 DNA Binding Superfamily AT1G49475 40.336 6.89e-22 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu7g0242 B3 2.5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0242 - - gmx:102661781 396.356