Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0241 ATGCTGCCTATCCGTTTCTTCAAGATTATTCTTAAAACTAATCTTGAAAGGCTTAAAACACCCAACAAGTTTGTAAGGAAATATGGAGACGGCTTGCCAAATCCAGTGTTTATGAAGCCTCCGGACGGCACTGAATGGGAAGTGTATTGGGCAAAACAGGATGGGGAGGTTTGGCTCGAAAAAGGTTGGAAAGAATTTGTTGTGCATTATTCTCTAGATGAAGGgcatttgattttctttaaatatgaaGGAACTTCCAAGATTGATGTACTCATTCTTGACCCAAAAAGTGCTCTAGAAATAGATTATCCTTCTTGTGCTGAAAAGGACAACCTTGACAATAGTGATAATGAATGGCCTGACCAGAAGCCTAAACACGTGAGAGGTGAGAATCCCACTCAAAGAACTTCATCGTTGAATTGGCCAACGCAAACAAGAGCACAGGAAGTAGCAAGAAATTTCATCTCATCCAATccttttttcactcttttcatAAAGCCTGTTCATGTGGTAGAAAGGAAGCTGTATGTACCAGATTTGAAAGGCATTATTGAGAACAAGAAGAATTATGTGATGCTGCAGCTTGGGGAAAGATCATGGAATGTGAAGTTGCTGCGTTGTCACATCCTCTCTGCTGGTTGGCCCTTGTTTGCAAGTGAAAGTGAATTGCAACCAGGAGACGTTTGTGTATTTGAACTGATTAACAGGGAGGATTCAGTTTTTAAAGTTCACGTTTTCAAAAGGCACAGTTAA 753 0.3865 MLPIRFFKIILKTNLERLKTPNKFVRKYGDGLPNPVFMKPPDGTEWEVYWAKQDGEVWLEKGWKEFVVHYSLDEGHLIFFKYEGTSKIDVLILDPKSALEIDYPSCAEKDNLDNSDNEWPDQKPKHVRGENPTQRTSSLNWPTQTRAQEVARNFISSNPFFTLFIKPVHVVERKLYVPDLKGIIENKKNYVMLQLGERSWNVKLLRCHILSAGWPLFASESELQPGDVCVFELINREDSVFKVHVFKRHS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0241 250 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 138 - -
Ssu7g0241 250 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 116 247 - -
Ssu7g0241 250 SMART B3_2 6 96 IPR003340 GO:0003677
Ssu7g0241 250 SMART B3_2 160 249 IPR003340 GO:0003677
Ssu7g0241 250 CDD B3_DNA 5 94 IPR003340 GO:0003677
Ssu7g0241 250 ProSiteProfiles B3 DNA-binding domain profile. 160 249 IPR003340 GO:0003677
Ssu7g0241 250 MobiDBLite consensus disorder prediction 111 139 - -
Ssu7g0241 250 Gene3D - 3 97 IPR015300 -
Ssu7g0241 250 CDD B3_DNA 159 247 IPR003340 GO:0003677
Ssu7g0241 250 MobiDBLite consensus disorder prediction 111 130 - -
Ssu7g0241 250 ProSiteProfiles B3 DNA-binding domain profile. 3 96 IPR003340 GO:0003677
Ssu7g0241 250 SUPERFAMILY DNA-binding pseudobarrel domain 5 96 IPR015300 -
Ssu7g0241 250 Gene3D - 142 249 IPR015300 -
Ssu7g0241 250 SUPERFAMILY DNA-binding pseudobarrel domain 156 248 IPR015300 -
Ssu7g0241 250 Pfam B3 DNA binding domain 14 87 IPR003340 GO:0003677
Ssu7g0241 250 Pfam B3 DNA binding domain 182 248 IPR003340 GO:0003677
Ssu7g0241 250 PANTHER B3 DOMAIN-CONTAINING 4 138 - -
Ssu7g0241 250 PANTHER B3 DOMAIN-CONTAINING 116 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0241 Ssu-Chr7 3993969 3995718 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0241 130 247 B3 DNA Binding Superfamily AT3G18990 32.558 2.08e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu7g0241 B3 5.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0241 - - gmx:102661781 368.237