Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0240 atgaagaagggaaaactgcacacacacacaaagacagAGATCAAAACCAAGGCAAATCTTCGACCACTGAGGCGAGGAGCGAGAGCAACTCAACTTCAAACAACATCCGTAGCTGCTCATCATCACGGGGAGGATGCTATCCTGCCTATACGTTTCTTTAAGATTATTCTTAAATCAAATCTGGAAAGGCTTCAAATCCCCAACAAGTTTACAAAGAGATATGGAGGGGGCTTGTCAAATCCGTTGTTTATCAAGCCTCCGGATGGCACTGAATGGAAAGTGCATTGGACAAAACAGAATGGTGAGGTTTGGTTCGAAAAGGGTTGGAAggaatttgttgaaaattattcCCTAGATCACGGGCATTTGGTCTTCTTTAAATATGGAGGAACTTCTCAGGTTGATGTACTCATACTTGAACAGAGTGCACTAGAAATAGACTACCCTTCTTGTGACGCTCCTGAAGAAAATGACAACCTTGAGCAGAGTGACGATGAATGGCCTGACCAGAATACTACACACTTGAGAGGTGAGGAGGCTACTCAAGGAACTTTATCACTGCCACTGAATTGGCCAAGGGAAGCTAGAGCTCGGGTATTAGCAAGAAGATTCATCTCATGCAATCCATTTTTCACGATTTCCATAAAACCTTTTCATCTAGCACTATCCAAGCTGCGTGTACCAGATTTGGAAGGGTATATTGAGAACAAGGTGAAGAATGTGATGCTGCAGCTTGGGAAAAGATCATGGAATGTGAAGTTGCTCAGTTGTCACTACCTCGGTTCTGGTTGGCACAAGTTTGCAAGGGGGACTGAATTGCAACTGGGAGACGTTTGCATCTTTGAACTGATTTGCCGAAAAGATCCAGTTTTTAAAGTTCATGTTTTCAAAAGCCAAAGTTAA 903 0.4053 MKKGKLHTHTKTEIKTKANLRPLRRGARATQLQTTSVAAHHHGEDAILPIRFFKIILKSNLERLQIPNKFTKRYGGGLSNPLFIKPPDGTEWKVHWTKQNGEVWFEKGWKEFVENYSLDHGHLVFFKYGGTSQVDVLILEQSALEIDYPSCDAPEENDNLEQSDDEWPDQNTTHLRGEEATQGTLSLPLNWPREARARVLARRFISCNPFFTISIKPFHLALSKLRVPDLEGYIENKVKNVMLQLGKRSWNVKLLSCHYLGSGWHKFARGTELQLGDVCIFELICRKDPVFKVHVFKSQS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0240 300 MobiDBLite consensus disorder prediction 154 181 - -
Ssu7g0240 300 CDD B3_DNA 51 139 IPR003340 GO:0003677
Ssu7g0240 300 ProSiteProfiles B3 DNA-binding domain profile. 210 299 IPR003340 GO:0003677
Ssu7g0240 300 Gene3D - 49 143 IPR015300 -
Ssu7g0240 300 ProSiteProfiles B3 DNA-binding domain profile. 49 142 IPR003340 GO:0003677
Ssu7g0240 300 PANTHER B3 DOMAIN-CONTAINING 50 297 - -
Ssu7g0240 300 Gene3D - 192 299 IPR015300 -
Ssu7g0240 300 SUPERFAMILY DNA-binding pseudobarrel domain 207 298 IPR015300 -
Ssu7g0240 300 CDD B3_DNA 209 297 IPR003340 GO:0003677
Ssu7g0240 300 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 50 297 - -
Ssu7g0240 300 SUPERFAMILY DNA-binding pseudobarrel domain 51 149 IPR015300 -
Ssu7g0240 300 Pfam B3 DNA binding domain 59 134 IPR003340 GO:0003677
Ssu7g0240 300 Pfam B3 DNA binding domain 236 298 IPR003340 GO:0003677
Ssu7g0240 300 SMART B3_2 52 142 IPR003340 GO:0003677
Ssu7g0240 300 SMART B3_2 210 299 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0240 Ssu-Chr7 3959590 3961519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0240 51 166 B3 DNA Binding Superfamily AT1G49475 40.000 1.55e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu7g0240 B3 1.2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0240 - - gmx:102661781 348.977