Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0226 ATGTATTCCAACAACTTGGGctataattttgtgtttttgttatgttgtAGATGgcataaagagaaaaaggaagaagcaaCAGAACCTGAGGCTGATCCTGAACGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTATATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGgtatattgaattttatgatGTCATGTCTGTCCCCATGGCAATAGCACTCTCGGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCCACTGGACTTATAGGCCCTTATTCTGGGGGAGCAAGGAGGCTGTATGTTGGCAATCTGCATACCAATATTACAGAAGCTGATCTTCGTGGGGTGTTTGAGGCATTTGGCCAAGTTGAGCTAGTCCAGCTGCCTCTTGATGAAAGTGGGCACCCCAAAGGTTTTGGCTTTGTTCAGTTTGCACGCCTTGAAGATGCAAGAAATTCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTAGGACAATCAAGGTATCGGCTGTTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTgattttgatgatgatgaaggaGGTGGCTTGTCCCTGAATGCATGTTCTCGAGCATTACTCATGCAGAAGTTGGATCGTAGTGGCACTGCATCAAGCATGGTTGGTTCCCTCAGTAATTCTGTTGTCAACAACACAGGTCCTAATCTACCAGCAACTGGAAACATACCAGCAGCAGCACTTCTAGGAGCTGCTTCTGCGGGTTCTCCACTGGTTTCTTCCCTTTCTTCTGTTCCTGCAGTAGTTGGATTGGCAGGTGGAGGTCTCCAAATTCCCACGGCTACAATTCCTTCTATTGATACAATCGGTGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCAAAGATGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCCAAGTTTGGGACGTTAAAACACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTACTTACGATTTGAAGATACCAAATCTGCAATAAGTGCCCAACGGGCCTTGCACGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTGCCTCAGTCATATGAGGATAAATTCCCAGACAGCAGATAA 1296 0.4174 MYSNNLGYNFVFLLCCRWHKEKKEEATEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVATGPTGLIGPYSGGARRLYVGNLHTNITEADLRGVFEAFGQVELVQLPLDESGHPKGFGFVQFARLEDARNSQSLNGQLEIGGRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSLNACSRALLMQKLDRSGTASSMVGSLSNSVVNNTGPNLPATGNIPAAALLGAASAGSPLVSSLSSVPAVVGLAGGGLQIPTATIPSIDTIGVPSECLLLKNMFDPKDETEPDFDLDIKEDVEAECSKFGTLKHIYVDKKSAGFVYLRFEDTKSAISAQRALHGRWFAGKMITASFMVPQSYEDKFPDSR 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0226 431 SUPERFAMILY RNA-binding domain, RBD 333 417 IPR035979 GO:0003676
Ssu7g0226 431 TIGRFAM SF-CC1: splicing factor, CC1-like family 19 429 IPR006509 GO:0003723|GO:0005634|GO:0006397
Ssu7g0226 431 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 233 355 IPR029123 -
Ssu7g0226 431 SMART rrm1_1 39 111 IPR000504 GO:0003723
Ssu7g0226 431 SMART rrm1_1 143 215 IPR000504 GO:0003723
Ssu7g0226 431 SMART rrm1_1 338 416 IPR000504 GO:0003723
Ssu7g0226 431 Gene3D - 332 431 IPR012677 -
Ssu7g0226 431 SUPERFAMILY RNA-binding domain, RBD 31 121 IPR035979 GO:0003676
Ssu7g0226 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 219 IPR000504 GO:0003723
Ssu7g0226 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 361 413 IPR000504 GO:0003723
Ssu7g0226 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 213 IPR000504 GO:0003723
Ssu7g0226 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 107 IPR000504 GO:0003723
Ssu7g0226 431 PANTHER RNA-BINDING PROTEIN 39 ISOFORM X1 21 428 - -
Ssu7g0226 431 Gene3D - 137 243 IPR012677 -
Ssu7g0226 431 Gene3D - 17 125 IPR012677 -
Ssu7g0226 431 PANTHER TRANSFORMER-2-RELATED 21 428 - -
Ssu7g0226 431 CDD RRM3_RBM39_like 336 418 - -
Ssu7g0226 431 CDD RRM1_RBM39_like 39 111 - -
Ssu7g0226 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Ssu7g0226 431 SUPERFAMILY RNA-binding domain, RBD 139 234 IPR035979 GO:0003676
Ssu7g0226 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 420 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0226 Ssu-Chr7 3659494 3665123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0226 39 205 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 3.45e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0226 K13091 - gmx:100789839 706.827