Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0223 ATGTTATCGGGGTTGATGAACTTATTGAGGGCATGCTTTCGGCCGGGTTCGGATGGGTTTACACGCACAGGTTCAGATGCTGGAGGTAGACAGGATGGACTATTGTGGTACAAGGACTCAGGGCAGCACTTGAATGGTGAATTTTCAATGGCTGTAATCCAAGCCAATAACTTGCTGGAAGATCAGAGCCAGATTGAATCAGGCAGTTTGAGCTCCAATGAATCCGGCCCTTATGGTACCTTCATCGGTATCTATGATGGCCATGGAGGGCCTGAGACATCGCGGTTTATCAATGATCACCTATTTCACCATCTCAAGAgATTTACTTCAGAGCAACAGTCAATGTCGGGGGATGTAATTCGCAAGGCACTCCAAGCAACAGAAGAGGGGTTTGTGTCAGTGGTTGCCCGACAGTGGTCCATGTCACCACAAATTGCAGCTGTTGGGTCATGCTGTCTTGTTGGTGTTATTTGTAACGGAACCCTTTATATAGCAAACCTTGGGGATTCCCGGGCAGTTTTGGGAAGAGCAGTCAAGGCAACTGGTGAGGTTTTAGCCATGCAATTATCATCAGAGCACAATGCATCGATAGAGTCTGTGAGACAGGAGCTGCGGTCTTTGCATCCCGATGATCCAAATATTGTGGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAGTTTCTAAATCTATTGGTGATGTCTATTTGAAAAAGGCCGAGTTCAATAGAGAACCACTATATGCTAAGTTTCGACTTCGCCAACCGTTCAAGAGGCCAATACTGAGCTCAGAACCATCAATTTCAATGCATCCTTTGCAGCCACatgatcaatttattatattcgcATCTGATGGACTCTGGGAGCACCTTAGCAATCAAGAAGCAGTTGATATAGTTCAAAACAGTTCCCGCAGTGTaagatacatatttaaatttgagtatacTAGATTGTGTTATATCATTACCTATAAGATTAATATGGATAAGAGCAGGTTGTTTTTCCATAAGAAAATTGTaatctaa 1032 0.4205 MLSGLMNLLRACFRPGSDGFTRTGSDAGGRQDGLLWYKDSGQHLNGEFSMAVIQANNLLEDQSQIESGSLSSNESGPYGTFIGIYDGHGGPETSRFINDHLFHHLKRFTSEQQSMSGDVIRKALQATEEGFVSVVARQWSMSPQIAAVGSCCLVGVICNGTLYIANLGDSRAVLGRAVKATGEVLAMQLSSEHNASIESVRQELRSLHPDDPNIVVLKHNVWRVKGLIQVSKSIGDVYLKKAEFNREPLYAKFRLRQPFKRPILSSEPSISMHPLQPHDQFIIFASDGLWEHLSNQEAVDIVQNSSRSVRYIFKFEYTRLCYIITYKINMDKSRLFFHKKIVI 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0223 343 Gene3D - 37 317 IPR036457 -
Ssu7g0223 343 PANTHER ALPHABET, ISOFORM E-RELATED 6 307 - -
Ssu7g0223 343 Pfam Protein phosphatase 2C 71 307 IPR001932 -
Ssu7g0223 343 SUPERFAMILY PP2C-like 56 304 IPR036457 -
Ssu7g0223 343 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Ssu7g0223 343 ProSiteProfiles PPM-type phosphatase domain profile. 47 343 IPR001932 -
Ssu7g0223 343 CDD PP2Cc 48 308 IPR001932 -
Ssu7g0223 343 SMART PP2C_4 39 312 IPR001932 -
Ssu7g0223 343 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 6 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0223 Ssu-Chr7 3606721 3609264 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0223 1 308 PP2C-type Phosphatase Gene Family AT4G38520 74.351 1.21e-180 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0223 - K01102 gmx:100794801 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0223 7 3606721 3609264 Ssu7g0223 7 3606721 3609264 ECH