Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0200 ATGCAATCCATCAGGAAGTCCTTCAAATCTTATGGTTCCTACAACAAACACACAAAAAGGTTTTCCGGCGCCGGAAACCCCGATTCTGACAACGAGCAGCTCCCCATCCTCCTCGACCAGGAAACCCGCCGCCACAGCGCCATGGCCGCCGGCGACTGCGTCGTCAAGATCGACGACGGCGCCGACCCCTCTCAGCCCCAGGGCTCCAAGATTTGGCGCGAGTCCAGCTACGAATTCTGGAACGACGGCGGCGCCTCCGCCGCCGGCAATGTCCGCGACGAGAGCTTCGATTTCCGGCAGCAGGAGGACCCGCCGTCGCAGCTGATCGGAAGGTTCCTCCACAAGCAGCGGGCCTCCGGCGACATGCAGCTCGACATGGATTTGGAAATGGAGGAGCTCCAGCGCGACGCCGATGACGGAAAGTTAACGCCGGTGGAGGAATCTCCGGCGACGCACCGCATCTCCAGGGAGCTCAAGGTCTCCTTCGAGGAACCCGCCTCCAATGTGATCCTCGAAGATCCCGTCAGAAGGAGGCACAGCAAGGACTCGCCGTCGATCGCGGAGTTCCAACGGCCGCCGCAGCCGCCGTATCACGACCCGCGCCGCTCGCCGTCTCCGTCTCCGGCTAACGACGGCGAGGTTCTGAGGTGCACCTCGAACGCTTCCTTCGAAAGGAACCTTTCCATGCAGAGGAAATCGACTTTGTTGAAGGCCAAAACGCGGTCGAGGCTGATGGACCCGCCAGAAGAGCAACCCGATAGAAAATCGGAGGATCTTCCGGATGAGTTTAAGGAGGTTCATTTCAGCTTCTGGACTCTTCTTGAGTGGTTGAGTTTGATTTTGATCATTGGTCTGTTGATAACCACTCTTTGTGTTCCCTATCTGAGGGACAAGGACCTGTGGCAGCTTAGGTTGTGGAAATGGGAGGTTATGGTTCTTGTTCTCATATGTGGTAGGTTGGTGTCTGATTGGGTTATTAGGATTGCTGTGTTCTGCATTGAGAGGAATTTTCTCTTGAGGAAGAGGGTGTTGTATTTTGTGTATGGTGTGAAGAAGGCGGTTCAGAATTGTGTTTGGTTGGGGCTTGTGTTGATTGCGTGGCATTTGTTGTTTGACAAGAGGGTGCAGAGGGAGACCCACAGTGATTTCCTCGAGTACGTGACTAAGGTGTTGGTGTGTTTCCTTGTGGGGACTTTGGTGTGGTTGTTGAAGACTCTTATGGTGAAGGTGTTGGCTTCGTCGTTCCATGTGAGCACCTACTTTGATAGGATTCAGGATTCGCTGTTTAATCAGTTTGTGATTGAGACCCTCTCGGGGCCGCCTTTGGTGGAGATTCAGAAGgctgaggaggaggaggagaggctCGCTGATGAGGTTCAGAAGTTGCAGAATGCTGGGGTTACCATACCCCCTGACCTTAGGGCAACTGCTTttgctaataataataagagtggGAGGTTGAGGAGTGGACTGCTGCAGAAAAGCCCCAGAACTAAGAGTGGCAAGTTTTCGCGCCCGCTTTCAAAGAGGTCCGATGATGGGAATGTGATCACTATTGATCACCTGCATAAGCTGAATCCCAATAATGTGTCTGCCTGGAATATGAAAAGGTTGATTAACATGGTCCGGCATGGGGCTCTTTCTACCTTGGATGAACACATACTTGACGATGCTAATGATGATGAGAATGCCACACAAATTAGAAGCGAGAACGAGGCGAAAGCTGCAGGCTAA 1734 0.5196 MQSIRKSFKSYGSYNKHTKRFSGAGNPDSDNEQLPILLDQETRRHSAMAAGDCVVKIDDGADPSQPQGSKIWRESSYEFWNDGGASAAGNVRDESFDFRQQEDPPSQLIGRFLHKQRASGDMQLDMDLEMEELQRDADDGKLTPVEESPATHRISRELKVSFEEPASNVILEDPVRRRHSKDSPSIAEFQRPPQPPYHDPRRSPSPSPANDGEVLRCTSNASFERNLSMQRKSTLLKAKTRSRLMDPPEEQPDRKSEDLPDEFKEVHFSFWTLLEWLSLILIIGLLITTLCVPYLRDKDLWQLRLWKWEVMVLVLICGRLVSDWVIRIAVFCIERNFLLRKRVLYFVYGVKKAVQNCVWLGLVLIAWHLLFDKRVQRETHSDFLEYVTKVLVCFLVGTLVWLLKTLMVKVLASSFHVSTYFDRIQDSLFNQFVIETLSGPPLVEIQKAEEEEERLADEVQKLQNAGVTIPPDLRATAFANNNKSGRLRSGLLQKSPRTKSGKFSRPLSKRSDDGNVITIDHLHKLNPNNVSAWNMKRLINMVRHGALSTLDEHILDDANDDENATQIRSENEAKAAG 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0200 577 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 2 256 IPR016688 -
Ssu7g0200 577 MobiDBLite consensus disorder prediction 486 502 - -
Ssu7g0200 577 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 256 576 IPR016688 -
Ssu7g0200 577 MobiDBLite consensus disorder prediction 1 43 - -
Ssu7g0200 577 MobiDBLite consensus disorder prediction 242 258 - -
Ssu7g0200 577 MobiDBLite consensus disorder prediction 171 214 - -
Ssu7g0200 577 MobiDBLite consensus disorder prediction 486 510 - -
Ssu7g0200 577 Coils Coil 442 465 - -
Ssu7g0200 577 MobiDBLite consensus disorder prediction 171 185 - -
Ssu7g0200 577 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2 256 - -
Ssu7g0200 577 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 256 576 - -
Ssu7g0200 577 MobiDBLite consensus disorder prediction 1 36 - -
Ssu7g0200 577 MobiDBLite consensus disorder prediction 238 258 - -
Ssu7g0200 577 MobiDBLite consensus disorder prediction 189 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0200 Ssu-Chr7 3340462 3342278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0200 52 577 Mechanosensitive Ion Channel Family AT1G78610 47.128 8.13e-156 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0200 K22048 - gmx:102665658 917.146