Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0197 ATGGCTCGAGGAAGGAAGAAGCGGCAGGGGAACACGGGCATTCCGGTGGATGCAAACCCCACTCAGCAAGAAACACATTCTTTGGATTTTGATGCCGAGTGTGAGACcaaaatgatcaaattatatGTGAACATCGGTGATGGGGTGGGAGGTTCTTCTTCTGTTCTAGAAGGTGTGAAAAAGAAGCGTGgcagaaaaagtaaaaaggagAAGGAGGACATGAACAAGAGGATGTTAGAGGGCAATTTGTTGGGGAAGAAAGATGTTCAAGACGATAACCACGGTGAAAATGGTGGTGGGGTCGTAGTAGGTTCTTCTTCTGTTAAAGAAGGTGTGAAAAAAAAGCGTGgcagaaaaagtaaaaaagagaaggaggacatgaaaaagaagatgttaGAGGGCAATTTACTGGGGAAGAAAGATGTTCAAGACTATAACCGCGGTGAAAATGGTGTGGTAGGAGGTTCTTCTTCTGTTAAAGAAGGCGTGAAAAAGAAGCGTGgcagaaaaagtaaaaaggagAAGGAGGATATTGAGAAGAAGGTGTTGGAGGGCAATTTGTTGGAGAAGAAAGACGCTCAAGATGAAAACCACGGTGAAAATGGTGGGGTTTCTGAGCAGAGACGcggtagaaaaagaaaattgcttaGCAATGATGATGGTGAGTTTGAAATGCCTGCGGATTCTTCACGAAGTGGCACTCAGAAGCAATATGGTCTTCGGGGTCGTAAAGTCAATGAAGAAGAGGTGGTGCCAAAAATCAACAAGAAGGATCCTAAGTGGATTGAAGAGAAGTCCTTAATGTGCCATCAATGTCAGAGAAATGATAAAGGCAGGGTTGTGAGGTGCACAAGTTGTAAGCGGAAAAGATTTTGCATATTCTGTATAAATAATTGGTATCCTCATTTGAAAGAGGATGATATTGCTAAGGCATGTCCCGTGTGCTGTGGTAATTGCAACTGCAAAGGATGCTTGAGATCCGATGAACTTATTAAAaaaatgaagaaaaatacaGAAACCAATGAAAATGAGAAGGTTGAACTCTCTATGCATTTGCTGCAAGTACTTCTTCCGTATTTAAGGCAGTTGGATGAAGAACAGATGATTGAGAATGAGACAGAAGCTAGGATACAAGGGCTCTCCGTCTCAGAGCTAAATATAGTACAGGCAGATTTCTCTAAAGACGAGCGTGTGTACTGTGACAACTGCAAAACGTCAATATTTGATTACCACAGAAGCTGTACAAAATGCTCTTTCGACCTTTGTCTCATCTGTTGTCGCGAGCTTCGTAGTGGGCAGCTTGTAGGTGGTGCAGATCCAATTGAGTTGGAGTTTGTCTGGCAAGGTCGTGGTTACTTGCAtgctgaaaaagaaaataaaagggtaAAACAAAATGCATCACATGTTGTTACTAAGCCTGTAGTTCGTGACTGGTCAAGATCTGGGTGGCGTGCAGCAAGTAATGGTAGTATTCCGTGTCCAAAAGTCAATGATGAATGTAACCATGGTTTTCTTGAACTGAGAAGCATATTAGGTCAACATTTTATCACTGAGTTAGTGCGTAAAGCAAACAAACTAGCACAAGCATACAAGCTTCAACATGTAGTTAAGACCTTTGACAACTTCTGTTCGTGTTTGAGGCTTGATAGAAACTCAGAtgttagatataataatatgaGGAAGGCTGCTTCTCGTGAAGATTCCAGTGACAACTATTTATACTGTCCTAGGGCTGTAGATCTACAGTACAAGGATTTAAGGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTCATTGTCAGCAATGTGCTTGAATGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGTCAGATGACTAAGACCAAGCATGAACAACATTTGAATGTGAAGGCAATTGATTGCTTAGATTGGTGTGAGGGAGAAATTAATATCCACCAATTCTTTACTGGGTATACAAAAGTTCGTGAGGATTGGCTTGATTGGCCTcagatattgaaattaaaagattGGCCTCCTTCTAATTTATTTGAGGAACGTTTGCCTCGACATTGTGCTGAGTTTATATCTTCCTTGCCCTTCAAGGAATATACTGATCCTCTCAGAGGTGCTCTTAACCTAGCTGTGAGGTTGCCCAATTTGGTTCTAAAGCCAGACATGGGGCCAAAGACATATATTGCTTATGGATTTCCTCAGGAACTTGGGCGTGGTGATTCAGTGACTAAGCTCCATTGTGATATGTCCGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAATTGGAATCAAAGCATCTTACTGCCATTGAGAAGTTGAAACAAAAGCACTTTGAGCAGGACAAAAGGGAGCTACTTGGTGATGATCAGGATGGAGAAACTAATGTTGACATGCTTAATAATTCATCTTCTACCATAAATGTTTTGGACAAGCAAAATAGTGTCCAAGTCATGGAACATGAAGGTGGATTATGTGATGGGAAAGAAGTTGATCAGTTTCATCAACCCTCTGATGGTAATGAGGATGCCATTGCTAATGAGGATGGTATTTCACGCGGATCAGAGCTCAAAGAGGttgacaaagtaaaaataaaacaagaaagtgATTTGTTGTTTGCAGGCGATGGTTCTGAAGGTGCTCTCTGGGATATTTTTCGGAGGCAGGATGTACCTAAATTGCAGGAATATCTGAAGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCTGTCCTTTAAAGCAGGTTATTCACCCCATCCATGACCAGACCTTCTATTTGACTATGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTATTCAGAAGTTAGGAGATGCTGTTTTCATTCCAGCTGGATGTCCTCACCAAGTCAGAAATCTTAAGTCATGTATTAAGGTTGCATTGGATTTTGTCTCTCCTGAAAATGTTGGGGAGTGCTTTCGTTTGACAGAGGAATTTCGCACACTTCCAATAAACCATGGGTCTACTGAGGACAAATTGGAGGTGAAGAAGATGACAATATATGCTATGCAAGATGTGATCGGAAAATTGGAGAACGCAAGGTCCGGGGAAACCAAGGTTCGAGAGTAA 3126 0.3957 MARGRKKRQGNTGIPVDANPTQQETHSLDFDAECETKMIKLYVNIGDGVGGSSSVLEGVKKKRGRKSKKEKEDMNKRMLEGNLLGKKDVQDDNHGENGGGVVVGSSSVKEGVKKKRGRKSKKEKEDMKKKMLEGNLLGKKDVQDYNRGENGVVGGSSSVKEGVKKKRGRKSKKEKEDIEKKVLEGNLLEKKDAQDENHGENGGVSEQRRGRKRKLLSNDDGEFEMPADSSRSGTQKQYGLRGRKVNEEEVVPKINKKDPKWIEEKSLMCHQCQRNDKGRVVRCTSCKRKRFCIFCINNWYPHLKEDDIAKACPVCCGNCNCKGCLRSDELIKKMKKNTETNENEKVELSMHLLQVLLPYLRQLDEEQMIENETEARIQGLSVSELNIVQADFSKDERVYCDNCKTSIFDYHRSCTKCSFDLCLICCRELRSGQLVGGADPIELEFVWQGRGYLHAEKENKRVKQNASHVVTKPVVRDWSRSGWRAASNGSIPCPKVNDECNHGFLELRSILGQHFITELVRKANKLAQAYKLQHVVKTFDNFCSCLRLDRNSDVRYNNMRKAASREDSSDNYLYCPRAVDLQYKDLRHFQWHWEKGEPVIVSNVLECTSGLSWEPLVMWRAFRQMTKTKHEQHLNVKAIDCLDWCEGEINIHQFFTGYTKVREDWLDWPQILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYTDPLRGALNLAVRLPNLVLKPDMGPKTYIAYGFPQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLESKHLTAIEKLKQKHFEQDKRELLGDDQDGETNVDMLNNSSSTINVLDKQNSVQVMEHEGGLCDGKEVDQFHQPSDGNEDAIANEDGISRGSELKEVDKVKIKQESDLLFAGDGSEGALWDIFRRQDVPKLQEYLKKHFREFRHVHCCPLKQVIHPIHDQTFYLTMEHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHGSTEDKLEVKKMTIYAMQDVIGKLENARSGETKVRE 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0197 1041 Gene3D Cupin 577 1007 - -
Ssu7g0197 1041 MobiDBLite consensus disorder prediction 68 94 - -
Ssu7g0197 1041 Pfam JmjC domain, hydroxylase 886 982 IPR003347 -
Ssu7g0197 1041 MobiDBLite consensus disorder prediction 124 146 - -
Ssu7g0197 1041 SMART cupin_9 687 999 IPR003347 -
Ssu7g0197 1041 MobiDBLite consensus disorder prediction 172 226 - -
Ssu7g0197 1041 ProSiteProfiles Zinc finger RING-type profile. 269 315 IPR001841 -
Ssu7g0197 1041 SUPERFAMILY Clavaminate synthase-like 580 1018 - -
Ssu7g0197 1041 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 59 1032 - -
Ssu7g0197 1041 MobiDBLite consensus disorder prediction 49 244 - -
Ssu7g0197 1041 ProSiteProfiles JmjC domain profile. 706 999 IPR003347 -
Ssu7g0197 1041 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 59 1032 IPR045109 GO:0032454|GO:0033169
Ssu7g0197 1041 MobiDBLite consensus disorder prediction 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0197 Ssu-Chr7 3231993 3246634 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu7g0197 JmjC 1.6e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0197 K15601 - gmx:100805723 1580.07