Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0193 ATGGAGAACGATACCGCCGCCAACAATAACACCACCGCCAGCGCGAAAGTAGGTTCTGGAGGAGTGAAATCGAACAATCATAACCTAGAAGAAGAGCATTCCAATTTGAATGGGGAGGAGCACATGGCAGAACAAGTGGAGGcagaagaagaggaagatcGAGAAGCAGATGAAGACGAAGGAGAAGCAACTGGATCTGCGCCCAACCCTCGCCAACCTTCAAGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCCCTCGCCCGAACCCTTCAGGAGCAGGAAAGGGCATATATGATGCTGAGAATGAATAATGAAGGAAGTGATTATGGAAGTTGGGAAGGTGGAAGCCATTTGCATGATGATGGGGATGATTTTGATGATCTACATGATGGCACTGACGTGGATgaggatgatgatgaagatgatgacaaTGAGGAGGATGAGGATGAGGATGCATTTGATGTCCATGCGCATGCTAGTGCTGGAGAACATGATAATCCTAGCATTGAGTTTGACCCAGATGTATTTTCAAGTGATGAAGCATATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGTTGGCTCTTGCTGGGATAAATGATCGGGAGGCAGAGGACATAGAGGAGCATGGGGAAAATTCTCAGGATGCTTGGGAGGAAGTTGATCCAGATGAACTTTCATACGAGGAATTACTGGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTATTGCCTGTTTGCCTTCTGTCAACTACAAGACTGGGAGTGATCAGCATGGAAGCAATGATTCGTGTGTCATTTGCCGGGTGGATTATGAGGATGGTGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGTAGTACCGAGGTATCTGCTTCCGGGAGCAACTTGTAG 996 0.4508 MENDTAANNNTTASAKVGSGGVKSNNHNLEEEHSNLNGEEHMAEQVEAEEEEDREADEDEGEATGSAPNPRQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNEGSDYGSWEGGSHLHDDGDDFDDLHDGTDVDEDDDEDDDNEEDEDEDAFDVHAHASAGEHDNPSIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGINDREAEDIEEHGENSQDAWEEVDPDELSYEELLALGEVVGTESRGLSTDTIACLPSVNYKTGSDQHGSNDSCVICRVDYEDGESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0193 331 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 27 329 - -
Ssu7g0193 331 Coils Coil 29 49 - -
Ssu7g0193 331 MobiDBLite consensus disorder prediction 1 25 - -
Ssu7g0193 331 SUPERFAMILY RING/U-box 271 325 - -
Ssu7g0193 331 MobiDBLite consensus disorder prediction 26 43 - -
Ssu7g0193 331 CDD RING-H2_PA-TM-RING 280 320 - -
Ssu7g0193 331 MobiDBLite consensus disorder prediction 67 83 - -
Ssu7g0193 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 327 IPR013083 -
Ssu7g0193 331 SMART ring_2 280 320 IPR001841 -
Ssu7g0193 331 MobiDBLite consensus disorder prediction 1 83 - -
Ssu7g0193 331 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 27 329 IPR043312 -
Ssu7g0193 331 ProSiteProfiles Zinc finger RING-type profile. 280 321 IPR001841 -
Ssu7g0193 331 Pfam Ring finger domain 278 320 IPR001841 -
Ssu7g0193 331 MobiDBLite consensus disorder prediction 109 154 - -
Ssu7g0193 331 MobiDBLite consensus disorder prediction 44 62 - -
Ssu7g0193 331 MobiDBLite consensus disorder prediction 130 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0193 Ssu-Chr7 3181739 3189702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0193 63 224 C3H Transcription Factor Family AT3G19910 54.268 7.49e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0193 K19045 - gmx:100306465 474.937