Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0188 ATGTCTTCCGGCGGCGGCGGAGAGAAGCCGTTCTACTGTCACGTGTGCAGTCAGAGGATCACGTGCTCCGATGACTCGGAACCGTTCTGCCCGATCTGTCTGGAAGGATTCGTGGAGGAATTGAACCCTAACTCTAACCCTAACCTAGACCCCGAGGAGGAGGACTCTTCGGATCCCCAATTCCCCTTCGACCCCTTCTCCCTCCTCCCTCTCCTGTTCTCCGCTTCCAGGACCCGACCCGAACCCGACAGGTTCGACCCGCTAATCTTCCTCCAGAACCACCTCCAGGATCTCCGCGCTGACGGCGCCAACGTCCAATTCGACTTCGGCCACACTTCCGAGTCCAGACTCCGTCTCCCGGCCAACGTCGGCGACTACTTCCTCGGCCCCGGCCTCGAGCAGGTGATCCAGCAGCTCGCCGACAACGACCCCAACCGCTACGGCCCGCCGCCCGCCGCCAAGGACGCCGTCAAGAATCTCCCGACGATCACCGTCGGCGACGAGCTGCTGAACTCGGAGCTGAACCAGTGCGTGGTCTGCCACGACGAGTTCGAGAAGGGGTCGCAGGTGATGCAGATGCCCTGCAAGCACGTGTACCACGGCGACTGCTTGCGTCCCTGGCTTTGCCTGCATAACTCGTGCCCCGTGTGTCGGTATGAACTGCCCACCGACGACGCGGATTACGAGAATCGGGGGAACGGCAGCGATGGGTCGAGGTCCGGTGGAAGCGatggtggcggtggcggtggaGGGGGGAGTAATAGGCCTGTCCGCAGGACTGTTAGAATACATCTGCGGCGTGCTTTTGATGCAGGTGGCTCTGCACAGGAGAGTGGTGAAAGGAATTGGGGATTCGATTGA 861 0.5993 MSSGGGGEKPFYCHVCSQRITCSDDSEPFCPICLEGFVEELNPNSNPNLDPEEEDSSDPQFPFDPFSLLPLLFSASRTRPEPDRFDPLIFLQNHLQDLRADGANVQFDFGHTSESRLRLPANVGDYFLGPGLEQVIQQLADNDPNRYGPPPAAKDAVKNLPTITVGDELLNSELNQCVVCHDEFEKGSQVMQMPCKHVYHGDCLRPWLCLHNSCPVCRYELPTDDADYENRGNGSDGSRSGGSDGGGGGGGGSNRPVRRTVRIHLRRAFDAGGSAQESGERNWGFD 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0188 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 224 IPR013083 -
Ssu7g0188 286 Pfam Ring finger domain 175 218 IPR001841 -
Ssu7g0188 286 PANTHER OS06G0101300 PROTEIN 7 272 - -
Ssu7g0188 286 SMART ring_2 177 217 IPR001841 -
Ssu7g0188 286 Pfam zinc-ribbon 11 41 IPR039525 GO:0061630
Ssu7g0188 286 MobiDBLite consensus disorder prediction 228 259 - -
Ssu7g0188 286 ProSiteProfiles Zinc finger RING-type profile. 177 218 IPR001841 -
Ssu7g0188 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 272 - -
Ssu7g0188 286 SUPERFAMILY RING/U-box 156 224 - -
Ssu7g0188 286 MobiDBLite consensus disorder prediction 267 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0188 Ssu-Chr7 3141019 3141879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0188 121 229 C3H Transcription Factor Family AT5G01980 46.789 3.01e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0188 K11982 - gmx:100785289 405.216