Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0174 ATGTCGGAAGCACCGTCTCAGCCACCGCCTCCATCCGCCGACGCGCCGCCGCCGCCGTACTGGTGCTACCACTGCGAGAAGCGCGTCTCCGTCGAAGCGCTCGCGAATCTCCACGACGTCGTTTGCGGCGAGTGCAAGAACGGCTTCGTGGAATCCATCCCCACGCCCTCGCGCTCTCGCTCTCCTTCCGCCTCCTCCGACGACCCCTACTTCGGCTCGCAGTTCCTCCAGGTGCTTCGCCTAATCGCGCAGTCGGCGCGTGACGACGACGCGTCGCCTCCGCCTCCGCCGAGCCGCTCTCCGGAGAACGATTTCCTCAGGATCGAGCTCGGCGGCTGGGACGACGACGAGGAGAACGAAAACGACAGCGGCAACGACGACGACAACGACAACGGCGGCGTCGAGTTCGAGGAGCACGAGGACGCGGAGGACGGCTCCGGCATCGAGGATCCGCACGGAGACGACGAGGATCTGAGGCGGAGGAGGCGCGAGCTGCTTCGGCTTCGGATTAGGGATTTGGCGACGCGCACGAGGAGCATGCGCAACCGGATCTTGGATTGGGCCGAGATTCTGATGGGCCTGGAGGACAATTCCATCGAGTTCCGCCTCCAGGTGCCCGAATCGGACCGCTACGTCGGGAATCCCGAGGATTACGTCGACGCGGCGGAGTACGAGGCGCTGCTGCAGACGCTGGCGGAGAGCGACGGCGGAGGGAGGAGGGGAGCGCCGCCGGCGTCGAAGTTGGCCGTGGAGGCGCTGCCGACGGTGAAGGTCGAGTGCGAAGGCGTGGTGTGCGCTGTGTGTAAGGATTTGCTTGGTGTTGGAGACGCGGCGAAGAGGTTACCGTGCGGGCATCAGTATCACGGAGATTGCATTGTTCCGTGGTTGAGTTCTAGAAATTCTTGCCCTGTTTGCAGGTTTGAGCTTCCGACGGATGATAAGGAATACGAGGAAGAGAGAGGGGTTAACGCTGCTTCTTCGAATTCTAATGGAGCTTCGAGTTCagctggtggtggtggtggaagtgGCGTCGTTTGA 1038 0.6156 MSEAPSQPPPPSADAPPPPYWCYHCEKRVSVEALANLHDVVCGECKNGFVESIPTPSRSRSPSASSDDPYFGSQFLQVLRLIAQSARDDDASPPPPPSRSPENDFLRIELGGWDDDEENENDSGNDDDNDNGGVEFEEHEDAEDGSGIEDPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLQVPESDRYVGNPEDYVDAAEYEALLQTLAESDGGGRRGAPPASKLAVEALPTVKVECEGVVCAVCKDLLGVGDAAKRLPCGHQYHGDCIVPWLSSRNSCPVCRFELPTDDKEYEEERGVNAASSNSNGASSSAGGGGGSGVV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0174 345 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 34 338 - -
Ssu7g0174 345 SUPERFAMILY RING/U-box 259 312 - -
Ssu7g0174 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 312 IPR013083 -
Ssu7g0174 345 ProSiteProfiles Zinc finger RING-type profile. 265 306 IPR001841 -
Ssu7g0174 345 MobiDBLite consensus disorder prediction 52 71 - -
Ssu7g0174 345 Pfam Ring finger domain 265 306 IPR001841 -
Ssu7g0174 345 MobiDBLite consensus disorder prediction 316 345 - -
Ssu7g0174 345 MobiDBLite consensus disorder prediction 113 151 - -
Ssu7g0174 345 MobiDBLite consensus disorder prediction 113 156 - -
Ssu7g0174 345 MobiDBLite consensus disorder prediction 48 71 - -
Ssu7g0174 345 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 34 338 - -
Ssu7g0174 345 SMART ring_2 265 305 IPR001841 -
Ssu7g0174 345 MobiDBLite consensus disorder prediction 322 337 - -
Ssu7g0174 345 Pfam zinc-ribbon 20 53 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0174 Ssu-Chr7 2929915 2930952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0174 178 318 C3H Transcription Factor Family AT5G01980 48.667 2.21e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0174 - - gmx:100780991 493.041