Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0163 ATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCACTTTGCCTCCTAAAACAATTGAGCTCAGTAAGGTGGATTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGACTCACGTTCTCAATTTAAGGCATATGCTGCTGCTGGGACAGTGAACCAAAACTATGCTAATATTCTCTTAATGCTTTTACGTCTCCGACAGGCTTGTGACCACCCGCTTCTTGTTAAAGAATATGATTCTGATTCTGTTGGGAAAGATTCTGTTGAAATGGCAAAAAATCTTCCGAGGGAAATGCTGATTAATCTGTTTAATTGTTTGGAAGCAACCTTCGCTATATGTCGTGTTTGCAATGATCCCCCTGAAGACCCTGTTATTACGATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGAATATTTGACCGGTGATGACAATATGTGCCCTGCAGTTGATTGTAAAGAACTGATTGGTGAAGATCTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCATCTCTGATGATGGTGGCGGTGGTAGTTCTGCAAATTCGCATCTTTGTGATTATTCACTAGTGCAGCAGAGTGACTACCCTTCATCGAAAATCAAAGCTGTTCTTGAGGTCCTGCAGTCAAATTGTAAATTGAAGAGTTCTAGTTCTGACTTGCCAAACTCATCTGGAGGCTGTAGAGATTCACCGCCTTTTGATGATTTATATGTTGAAGACTGTGATTCAGATGTTAGGGTTacaaaacacacaagaaagTATTCAGAGTCCACAACTGAGGGACCAATAAAGGCTATAGTTTTTTCCCAGTGGACGAGCATGTTGGACTTAGTTGAGACATCGTTAAGACAATTTGGTATACAGTTCAGGAGACTTGATGGTAGGATGACTCTGGGTGCGAGGGACAGAGCTGTTAAGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAAACTCGTCCTGTTACTGTGACACGGATCACTATAAAAGATACAGTTGAAGATAGGATATTGGCTCTTCAGgaagaaaagagaaaaatggttGCATCTGCTTTTGGGGAAGACCATGCTGGCACTTCTGGAACTCGCCTTACAGTGGATGATCTGAAATATCTTTTTATGGTCTAG 1281 0.4036 MLRRTKGTLLDGKPIITLPPKTIELSKVDFSIEERAFYTKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYDSDSVGKDSVEMAKNLPREMLINLFNCLEATFAICRVCNDPPEDPVITMCGHVFCYQCVSEYLTGDDNMCPAVDCKELIGEDLVFSKATLRSCISDDGGGGSSANSHLCDYSLVQQSDYPSSKIKAVLEVLQSNCKLKSSSSDLPNSSGGCRDSPPFDDLYVEDCDSDVRVTKHTRKYSESTTEGPIKAIVFSQWTSMLDLVETSLRQFGIQFRRLDGRMTLGARDRAVKDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGTSGTRLTVDDLKYLFMV 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0163 426 ProSitePatterns Zinc finger RING-type signature. 135 144 IPR017907 -
Ssu7g0163 426 CDD SF2_C_SNF 269 377 - -
Ssu7g0163 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 425 IPR027417 -
Ssu7g0163 426 SUPERFAMILY RING/U-box 118 176 - -
Ssu7g0163 426 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 1 425 - -
Ssu7g0163 426 ProSiteProfiles Zinc finger RING-type profile. 120 156 IPR001841 -
Ssu7g0163 426 Pfam SNF2-related domain 1 81 IPR000330 GO:0005524|GO:0140658
Ssu7g0163 426 Gene3D - 19 425 IPR027417 -
Ssu7g0163 426 SMART ring_2 120 158 IPR001841 -
Ssu7g0163 426 Pfam Zinc finger, C3HC4 type (RING finger) 120 156 - -
Ssu7g0163 426 Pfam Helicase conserved C-terminal domain 271 368 IPR001650 -
Ssu7g0163 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 170 IPR013083 -
Ssu7g0163 426 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 255 421 IPR001650 -
Ssu7g0163 426 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 425 - -
Ssu7g0163 426 SMART helicmild6 285 368 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0163 Ssu-Chr7 2724098 2729248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0163 1 426 RAD5 or RAD16-like Gene Family AT1G61140 56.208 1.06e-148 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0163 - - gmx:100795142 786.178