Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0162 atggctgattgtatatatattagttcGTCTGATGATGACTTGGAGGAGATAGAAGATCCAAGGAGGGCTCTTCCGCATTGGGCAACTACTACTGAAAGGAGTTCAGATTATGGTGGATGGTCTAGGCGGGATAGTTCTTCAAGAGGGGCAAATAGTTCAAACCCAAGCTCTTCTAATGTTTATAATCATTCACAAGCCAAGCCTCATACCTTACCTGTGTCCAGCACCAATACACTGAACCACAGAATTGTGCGAAGAGATGAGCTTTCCTACCATGCCCAGAATGGAAACACAAGTCAGCATCAAACAGTTAATTCCGGAATTTCAAATACTCATGGTGCAGATTATGAGAAAATGTCATCTCAGCAAGCTTTCAAGAGGACCCTTCCGTCATCTCTTCAGCCATCTGTAACAAGGGCTCTTCCTTCTTCATCATTTGCATCAGACAACAGATTAAGTGACTTAAAAGATAATGTGAGCAGCAGTCAGCATTATGATGCATATAAGAATCGTCGCCATGGAGTAGGACCTAGCACATCCAGTGACAGGGGCTACATTCATGACAATTTTAGCAGGGGCAATGATGAAGATCGTTTCTTCCATCAAAATGGTGGGATTAGGATTCATCCTTCATCTTTGATGCTTGGAAAGGCTATAACTCCACAGTTTGCTAGTTCTAGTGAATCTGCATATCGTTCTGGAGTAGGTGACGAAAGGGCTTCTGGAAATGACGAAAGACTTATTTATGAGGCAGCATTACAGGATATCAGTCAACCAAAAACAGAATATGACTTGCCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTCGGAAAGACAATTTCGATGATTGCTCTCATCCTAGCACAGAGGTCATtacaatcaaaatcaaaaacagaTGATATGAGCAATCATAAAACTGAAGCTTTGAATttggatgatgatgatgatgacaacGGTAGTGTTGAtgtggaaaaacaaaaaaagagtgaaGAATCAGATGATGTAAAACCTATTATAGAACCAAGCAGTTCAACACAGGCACCTGGTAGAAAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCTAGTGTTCTTCGACAGTGGGCCAGGGAACTTGATGAAAAAGTTGGAGATGAAAAGCTTTCTGCTTTGGTTTATCATGGGGGCAGTAGAACAAAGGATCCTGTTGAACTGGCAAAATTTGATGTGGTTCTCACAACATACTCTATTGTGACTAATGAAGTTCCCAAGCAACCATTAGTTGAGGAGGAGgatattgatgaaaaaaatgggGAAAGATTTGGGTTATCCTCTGAGTTTTCTGTTAGTAAAAAGAGGAAAAGCCATTTAATGGAAATAAGAAGAGTAAAAAAGGTAGAAAAGGAATTGACAATTCTTCTATTGAATGTGGTTCTGGTCCTCTTGCAAAAGTAG 1527 0.3883 MADCIYISSSDDDLEEIEDPRRALPHWATTTERSSDYGGWSRRDSSSRGANSSNPSSSNVYNHSQAKPHTLPVSSTNTLNHRIVRRDELSYHAQNGNTSQHQTVNSGISNTHGADYEKMSSQQAFKRTLPSSLQPSVTRALPSSSFASDNRLSDLKDNVSSSQHYDAYKNRRHGVGPSTSSDRGYIHDNFSRGNDEDRFFHQNGGIRIHPSSLMLGKAITPQFASSSESAYRSGVGDERASGNDERLIYEAALQDISQPKTEYDLPAGVLSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMIALILAQRSLQSKSKTDDMSNHKTEALNLDDDDDDNGSVDVEKQKKSEESDDVKPIIEPSSSTQAPGRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSALVYHGGSRTKDPVELAKFDVVLTTYSIVTNEVPKQPLVEEEDIDEKNGERFGLSSEFSVSKKRKSHLMEIRRVKKVEKELTILLLNVVLVLLQK 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0162 508 SMART ultradead3 270 497 IPR014001 -
Ssu7g0162 508 MobiDBLite consensus disorder prediction 95 165 - -
Ssu7g0162 508 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 46 491 - -
Ssu7g0162 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 448 IPR027417 -
Ssu7g0162 508 MobiDBLite consensus disorder prediction 327 341 - -
Ssu7g0162 508 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 46 491 - -
Ssu7g0162 508 MobiDBLite consensus disorder prediction 95 185 - -
Ssu7g0162 508 Gene3D - 249 334 IPR038718 -
Ssu7g0162 508 MobiDBLite consensus disorder prediction 1 78 - -
Ssu7g0162 508 Gene3D - 369 491 IPR038718 -
Ssu7g0162 508 MobiDBLite consensus disorder prediction 28 78 - -
Ssu7g0162 508 MobiDBLite consensus disorder prediction 324 384 - -
Ssu7g0162 508 MobiDBLite consensus disorder prediction 350 367 - -
Ssu7g0162 508 Pfam SNF2-related domain 277 483 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0162 Ssu-Chr7 2720700 2723825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0162 9 479 RAD5 or RAD16-like Gene Family AT1G50410 46.667 6.61e-115 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu7g0162 SNF2_N 3.4e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0162 - - gmx:100795142 769.615