Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0150 ATGATTAGTCTTGTGGTTTGTCGGTCTCGCCTGTGGGTAGTGACCATTGTGTTCTACACATGCATTTTGATCCCATCGATGCAACTGAAGAGGGCACTTGTAAGCATGTTTGGCCGTCTCatgattttcttctcttatgaGACCAAAGGTATGGccaaggagatggagttcccAGAAATTCCTTCCCTACCCGTGGCAAGGTACGAGGATTTGAGGGGCCATTCCTGTGTGGGAGGAGAAGATGGAGAGAGAGACGAGATTTGCTCCATTTGCTTGGTGGAGTATGAGGGGGAGGACGCAGTGAGCGAGCTGGGAAGATGTGGGCACGTGTTCCATCTCAATTGCATTGAGCAATGGATACACCGCAATCAATTCTCTTGCCCACTTTGTaggtcttttttattttctcaacatTGTGTCCACACCCAGAATTAG 435 0.4276 MISLVVCRSRLWVVTIVFYTCILIPSMQLKRALVSMFGRLMIFFSYETKGMAKEMEFPEIPSLPVARYEDLRGHSCVGGEDGERDEICSICLVEYEGEDAVSELGRCGHVFHLNCIEQWIHRNQFSCPLCRSFLFSQHCVHTQN 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0150 144 SMART ring_2 88 130 IPR001841 -
Ssu7g0150 144 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 135 - -
Ssu7g0150 144 Pfam Ring finger domain 88 131 IPR001841 -
Ssu7g0150 144 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 135 - -
Ssu7g0150 144 SUPERFAMILY RING/U-box 87 137 - -
Ssu7g0150 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 136 IPR013083 -
Ssu7g0150 144 ProSiteProfiles Zinc finger RING-type profile. 88 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0150 Ssu-Chr7 2589960 2590394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0150 1 137 C3H Transcription Factor Family AT4G38140 36.496 4.75e-24 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0150 - - pvu:PHAVU_007G012000g 193.741