Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0144 atggtgAACGTGATTGAATTGCAGAAACAGTTGCAGAGGTGGCAGCAGCAGAGTGGGAACGTAAATGTTGATGCCAACGGAGAACTCATGTACGTCAAGGTCATGACTGATGAGCAGTTGGAAACTCTGAGGAAGCAAATTGCAGTTTATGCCACCATTTGTGAGCAACTTATTGAGATGCACAGAACACTCTCAGCTCAGCAGGATCTTTCAGGGGTTAGGTTGGGAAACATATACTGTGATCCATTGATGACATCTGGTGGGCACAAAATAACATCCAGACAAAGGTGGACACCTACACCCGTGCAGCTTCAGATTCTTGAACGTATATTTGATCAGGGAAATGGAACTCCAAACAAGGAAAAAATCAGGGAGATCACTGCTGAACTGGGCCAGCATGGTCAAATTTCTGAAACAAATGTCTATAATTGGTTTCAGAATAGGCGTGCTCGATCCAAAAGAAAACTGCAAAATGTGGCTCCTAGCAACACTGAATCAGAAGTGGACACTGAAGTTGATTCCAAGGATAAGAAGACAAAACCAGAGGAATTTCAGTCCCAATATAACATAACAACTTCTGGAGGGGCTGAAAAGTTGTGCTTCCAGAACCCTCAACTATTCTCTGACTTGCAGTACTTGAACCCAGATTCCAACAAACCATATTCCATGTTCCCAACAGATGGCAGTCTGAAATCCACAAGAAATTTGAGTCGTATGTCTGTTTTTAATGAGGTGCTGTCAAACTCAAGGGGTGAGTATGCAGGTGGAAAAATGGAAGTTCCTGGGACAGTGAGCTACAATTTATTCCAACAAGCAGGAGACTGCAATCTGGCGGGTTGA 840 0.4321 MVNVIELQKQLQRWQQQSGNVNVDANGELMYVKVMTDEQLETLRKQIAVYATICEQLIEMHRTLSAQQDLSGVRLGNIYCDPLMTSGGHKITSRQRWTPTPVQLQILERIFDQGNGTPNKEKIREITAELGQHGQISETNVYNWFQNRRARSKRKLQNVAPSNTESEVDTEVDSKDKKTKPEEFQSQYNITTSGGAEKLCFQNPQLFSDLQYLNPDSNKPYSMFPTDGSLKSTRNLSRMSVFNEVLSNSRGEYAGGKMEVPGTVSYNLFQQAGDCNLAG 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0144 279 CDD homeodomain 94 155 IPR001356 GO:0003677
Ssu7g0144 279 SMART HOX_1 92 159 IPR001356 GO:0003677
Ssu7g0144 279 MobiDBLite consensus disorder prediction 153 182 - -
Ssu7g0144 279 Gene3D - 96 160 - -
Ssu7g0144 279 SUPERFAMILY Homeodomain-like 92 156 IPR009057 -
Ssu7g0144 279 PANTHER - 13 278 - -
Ssu7g0144 279 MobiDBLite consensus disorder prediction 168 182 - -
Ssu7g0144 279 PANTHER WUSCHEL-RELATED HOMEOBOX 13 13 278 IPR044559 GO:0003700
Ssu7g0144 279 ProSiteProfiles 'Homeobox' domain profile. 90 155 IPR001356 GO:0003677
Ssu7g0144 279 Pfam Homeodomain 94 154 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0144 Ssu-Chr7 2517215 2519549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0144 4 279 Wox Gene Family AT4G35550 48.000 4.66e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu7g0144 Homeodomain 1.9e-18 CL0123