Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0141 atgaagagagaaagagaagttgATAGCATAACCATGGCCAACTACTTGATGCTGCTTTCTCGAGGAGGTGAATTTGAGAGCACCAACACCAACTACTTGAAGTCTTCCAACAACCGTGTGTTTGAGTGCAAGACGTGTAACCGGCAGTTCCCGTCGTTTCAGGCATTGGGTGGCCACCGTGCGAGTCACAAGAAGCCAAGGTTGATGGGAGAGAGTGATGATCATAACCAAGTGCTTGATGGGTCACCACCAAAGCCTAAAACACACGAGTGTTCCGTTTGTGGATTGGAGTTTGCGATAGGACAAGCTTTGGGAGGGCACATGAGGCGCCATAGAGCAGCAGCATCAAATAGAAACGTGTACACTACTAATTCTTTGATGAGTACTAGCAGTAGTGGTGGTAGCAGTGTTGATAACACTTTACCAAACGGGAACCACAAGGCTAACAACACCAAGAGAGTTTTGTTTCCTGATTTGAATCTGACGCCCATAGAGAATGATTTGAAGCTTCTCAAGGTTCGACAAGCAACTCCTTTGGTTCACTGCTTCAATTGA 555 0.4468 MKREREVDSITMANYLMLLSRGGEFESTNTNYLKSSNNRVFECKTCNRQFPSFQALGGHRASHKKPRLMGESDDHNQVLDGSPPKPKTHECSVCGLEFAIGQALGGHMRRHRAAASNRNVYTTNSLMSTSSSGGSSVDNTLPNGNHKANNTKRVLFPDLNLTPIENDLKLLKVRQATPLVHCFN 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0141 184 MobiDBLite consensus disorder prediction 57 86 - -
Ssu7g0141 184 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Ssu7g0141 184 MobiDBLite consensus disorder prediction 64 80 - -
Ssu7g0141 184 SMART c2h2final6 41 63 IPR013087 -
Ssu7g0141 184 SMART c2h2final6 89 111 IPR013087 -
Ssu7g0141 184 Gene3D Classic Zinc Finger 21 115 - -
Ssu7g0141 184 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Ssu7g0141 184 PANTHER ZINC FINGER PROTEIN ZAT5 11 182 - -
Ssu7g0141 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Ssu7g0141 184 SUPERFAMILY beta-beta-alpha zinc fingers 39 111 IPR036236 -
Ssu7g0141 184 MobiDBLite consensus disorder prediction 125 150 - -
Ssu7g0141 184 Pfam C2H2-type zinc finger 89 113 - -
Ssu7g0141 184 Pfam C2H2-type zinc finger 40 66 - -
Ssu7g0141 184 PANTHER ZINC FINGER PROTEIN ZAT12 11 182 - -
Ssu7g0141 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0141 Ssu-Chr7 2469294 2469848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0141 1 180 C2H2 Transcription Factor Family AT2G37430 39.785 2.48e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g0141 zf-C2H2_6 5.9e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0141 - - gmx:100816598 265.388