Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0137 ATGGTTCTATCAAACAAGAAGCTGAAGCTTAAGCTCAGAGATGAATTAGCCCAACAACAAAACCAAAGCAACTCCAACGTCGCTGAAGTCCCTTCATCTTCGAACTCTCTGAAAACTCTTCTGGACGCCGCCACCCCCGCACCCAGATTGTCCAAGAGAGAGAAACGCCGAAAGCTTCGATCCTCGCAACACCCTCACCCTCCAGAACAGGCCAAGAAGGAAACTGAGACAGAGGGTTCGGCCGATaacaaaaagaggaaaaggaaggTAGGGGACGATGACGTGGCAAATGGAGTTGCCAACAAATCACAGAACAacagcaagaagaagaagaagaagaagaagaagaaatccagAGTGGCTGAAGAAAAGGGTTCTAATGGTGGAGGGGAAGTGCTGGAGGCTACAGAGTTAACCAAGACCAATACAACCACCACTGGTCAAGACAATGGTGATGTTCCTACAAAGGTTTATGTTGGAGGAATTCCCTATTACTCAACTGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATTACTGAAGTTGATTGCATGACTTTTCCTGAAACTGGCAAGTTTAGAGGGATTGCCATTATTAGTTTTAAGACTGAAGCAGCAGCTAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAGCCATATAAAGCAACTCGAGCCAGTAAAGCATCGGATTTTGCTCCAGAAATTTTGGAGGGGTACAATAGAATATATGTTGGAAATTTGTCGTGGGATATAACAGAGGAAGAACTGAGGAAATTCTTCAAAAGTTGTAATATAACATCGCTGCGGTTCGGTATGGACAAGGAGACAGGAGAATTTCGAGGGTATGCCCATGTGGATTTCAGTGATAGTCAGTCACTCAAAACAGCACTTACATTGGACCAAAATGTTTTGTATGGGAGACCTGTCAGGATAAGTTGTGCAGTTCCTTTGAAGAAAAAACCAGGAACTCATACAAGCTCTGTGTCCACGGTTAATGGAGCTGATGGTGAGAAATCAAGTTCCACAGGGAGTGGCAAGATGAAGAGGAGGACGTGCTATGAGTGTGGTGAGAAAGGACATATTCTTTCGGCATGCCCAAAGAAACAAACAGTTGCTGCAACTACAACCTAA 1161 0.4229 MVLSNKKLKLKLRDELAQQQNQSNSNVAEVPSSSNSLKTLLDAATPAPRLSKREKRRKLRSSQHPHPPEQAKKETETEGSADNKKRKRKVGDDDVANGVANKSQNNSKKKKKKKKKKSRVAEEKGSNGGGEVLEATELTKTNTTTTGQDNGDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFPETGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRASKASDFAPEILEGYNRIYVGNLSWDITEEELRKFFKSCNITSLRFGMDKETGEFRGYAHVDFSDSQSLKTALTLDQNVLYGRPVRISCAVPLKKKPGTHTSSVSTVNGADGEKSSSTGSGKMKRRTCYECGEKGHILSACPKKQTVAATTT 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0137 386 MobiDBLite consensus disorder prediction 332 357 - -
Ssu7g0137 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 326 IPR000504 GO:0003723
Ssu7g0137 386 MobiDBLite consensus disorder prediction 14 152 - -
Ssu7g0137 386 MobiDBLite consensus disorder prediction 105 119 - -
Ssu7g0137 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 319 IPR000504 GO:0003723
Ssu7g0137 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 223 IPR000504 GO:0003723
Ssu7g0137 386 MobiDBLite consensus disorder prediction 136 152 - -
Ssu7g0137 386 SMART c2hcfinal6 361 377 IPR001878 GO:0003676|GO:0008270
Ssu7g0137 386 MobiDBLite consensus disorder prediction 15 41 - -
Ssu7g0137 386 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 58 383 - -
Ssu7g0137 386 CDD RRM1_PHIP1 157 228 IPR034361 -
Ssu7g0137 386 Gene3D - 246 333 IPR012677 -
Ssu7g0137 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Ssu7g0137 386 Gene3D - 93 240 IPR012677 -
Ssu7g0137 386 SUPERFAMILY RNA-binding domain, RBD 154 232 IPR035979 GO:0003676
Ssu7g0137 386 Pfam Zinc knuckle 360 377 IPR001878 GO:0003676|GO:0008270
Ssu7g0137 386 SUPERFAMILY Retrovirus zinc finger-like domains 345 380 IPR036875 GO:0003676|GO:0008270
Ssu7g0137 386 CDD RRM2_PHIP1 251 322 IPR034362 -
Ssu7g0137 386 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 58 383 - -
Ssu7g0137 386 SUPERFAMILY RNA-binding domain, RBD 244 349 IPR035979 GO:0003676
Ssu7g0137 386 MobiDBLite consensus disorder prediction 63 95 - -
Ssu7g0137 386 SMART rrm1_1 251 322 IPR000504 GO:0003723
Ssu7g0137 386 SMART rrm1_1 156 228 IPR000504 GO:0003723
Ssu7g0137 386 MobiDBLite consensus disorder prediction 330 357 - -
Ssu7g0137 386 Gene3D - 338 385 - -
Ssu7g0137 386 ProSiteProfiles Zinc finger CCHC-type profile. 362 377 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0137 Ssu-Chr7 2426113 2427763 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0137 155 354 Eukaryotic Initiation Factors Gene Family AT2G36660 27.962 2.10e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0137 - - gmx:100814693 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0137 7 2426113 2427763 Ssu7g0137 7 2426113 2427763 ECH