Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0133 ATGATGGTATCGAGGGGACTGTTCGGGTGGTCCCCGCCGCACATACAGCCTCTCACGCCGGTCTCCGAGGTGTCGGAGCCGCCGGAGTCGCCGTCGCCGTACCTCGACCTCGGCGCCGAGACCTCCGCGTCGCAGCCGATGGAGGTCGAGGAGGAGATGGAGGAGGCCGACGAGATTGAGCCGCCGCCCGCCGCCGTCCCTTTCTCCCGCCTCTTCGCCTGCGCCGACCGCCTCGACTGGTTCCTCATGGTCGTCGGCTCCCTCGCCGCCGCCGCGCACGGCACCGCTCTCGTCGTTTACTTGCACTACTTCGCCAAGGTTCTCCGGGTTCCTCAGCAGGGTCCGCCGGAGGAGCAGCTTCACAGGTTCAAGGAGCTTGCTTTAACTATTGTTTATATTGCTGGGGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGTTGGATTCTTACTGGAGAACGGCAAACTGCTGTCATCAGATCAAAATATGTCCAAGTATTACTTAACCAAGATATGAGTTTTTTTGATACTTATGGAAATAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGCTGCTCATTCAGTCTGCTCTTAGTGAAAAGGTTGGgaattatattcataatatgGCAACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTGATAACATTAGCTACAGGACCATTTATTGTTGCTGCAGGaggaatatcaaatatattccTCCATAGGCTTGCTGAGAATATTCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAgGCAGTTTCCTATATAAGGACCTTGTATGCATTTACAAATGAAACACTGGCTAAATATTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGCCTTGGTTTTACATATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGCTCTTGGTTGTACATGGAAAAGCTCATGGTGGTGAAATTATAACAGCTCTGTTTGCTGTGATTCTAAGTGGCTTGGGATTGAATCAAGCAGCTACAAATTTCTACTCATTTGATCAAGGGCGAATAGCTGCCTATAGACTATTTGAGATGATAAGCCGATCATCCTCCTCTTTTAATCATGATGGCAGTGCTCCAGCTTTTGTGCAAGGAAATATAGAATTTCGGAATGTTTACTTCAGTTATCTTTCTCGCCCTGAAATCCCTATCTTGAGTGGGTTTTATCTCACTGTTCCTGCTAAGAAAGCTGTGGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCCCTCATGGAGCGGTTCTATGATCCAACATTAGGGGAAGTTCTTTTAGATGGTGAAAATATCAAGAATATGAAACTGGAATGGCTAAGGAGTCAAATAGGACTGGTCACCCAGGAACCTGCTCTACTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGAGATACCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACCTTTATCAGCTCATTAGATAAAGGTTATGACACACAGGTTGGCAGGGCTGGTCTAGCTTTGACAGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTTCTTTTAAATCCATCCATTCTTCTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAGGAGGCTCTGGATCTCCTCATGTTGGGAcgctcaacaataataattgctCGAAGGCTTAGTCTTATAAAGAATGCTGATTATATAGCTGTTATGGAGGATGGTCAACTTGTTGAAATGGGTACTCATGATGAGTTACTGACCCTGGATGGCTTATATGCAGAGCTTCTTCGATGTGAAGAGGCCAcaaaacttcccaagagGATGCCTGTTCGAAACTACAAGGAGACTGCAACTTTCCAAATTGAGAAAGATTCTTCAGAAAGTCATAGCTTCAAAGAACCTTCATCtcctaaaatgataaaatcacCGTCTCTTCAAAGAGTTTCTGCCGTATTTCGGCCTTCAGATGGCTTCTTTAACTCACAAGAATCACCAAAAATTCGGAGCCCACCATCTGAGAAGATGATGGAAAATGGCCAGTCTTTAGATTCAGCAGATAAGGAGCCATCAATAAAAAGGCAGGATAGTTTTGAAATGAGACTACCAGAGTTACCCAAGATCGATGTTCAATGTGTGCATCGACAAACATCAAATGGTTCTGACCCAGAATCCCCCGTTTCACCTCTTTTGACTTCTGATCCTAAAAATGAACGCTCCCATTCACAGACTTTTAGCAGACCTGATAGTCATTCTGACGATCTTTCAGTGAAAATGAGTGAAACAAAGGATGCAAGGCATCGAAAACAACCCTCAATTTGGAGGCTAGCAGAGCTTAGTTTTGCAGAGTGGCTTTATGCAGTGTTAGGAAGCACAGGTGCTGCTATCTTTGGTTctttcaacccccttcttgctTATGTTATTGGCCTGGTGGTGACAGATTACCATAGAATTGATGAAGTTCATCACTTACGAAGGGAGATAGAAAAGTGGTGCTTGATCATTGCCTGCATGGGTATTGTGACAGTTGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGGGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAACTGGATGGTTTGATGAAGAGGAAAATAGTGCTGACAATTTATCCATGCGCTTGGCCAATGATGCTACATTTGTGCGAGCAGCTTTCAGTAACCGACTTTCCATATTTATACAGGACAGTACTGCAGTTATTGTTGCTTTTCTCATTGGTGTTTTGCTGCACTGGCGATTAGCACTTGTGGCTTTAGCAACACTTCCTGTTCTTTGTGTTTCTGCTGTTGCCCAGAAATTGTGGCTTGCTGGATTTTCAAAGGGCATACAGGAAATGCATAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGAAATATTTACACTGTTGTTGCATTTTGTGCTGGTAATAAGGTGATGGAACTCTACCAGTtgcagttaaataaaatatttaagcaaAGCTTTTTTCATGGAGTGGCCATTGGTTTTGCATTTGGCTTTTCACAGTTTCTGCTTTTTGCTTGTAATGCCCTTCTACTTTGGTACACTGCAATATGTGTAAAAAAGGGTTATGTGGATCCACCTACTGCTCTCAAGGAGTACATGGTTTTCTCATTTGCTACATTTGCCCTTGTAGAGCCTTTTGGATTGGCTCCTTACATACTTAAGCGACGTAAATCTCTCATCTCAGTGTTTGAAATTATAGATCGTGTGCCTAAAATTGATCCTGATGATAGCTCAGCACTGAAGCCACCCAATGTATATGGAAGCATTGAGTtgaaaaatgttgatttttgttatCCTTCTCGACCAGAACTGTTGGTATTAAGCAATTTTAGTCTCAAAGTCAATGGAGGACAAACAATTGCCGTTGTGGGAGTTTCAGGGTCAGGGAAGAGCACAATAATATCTTTGATTGAGAGATTCTATGATCCAGTTGCCGGCCAAGTTTTGCTAGATGGGAGGGatttaaaactatataatttgagatggttgaggaGCCACCTTGGTCTGGTTCAGCAGGAACCAATTATCTTCTCAACAACCATAAGGGAAAACATCATATATGCCAGGCATAATGCCAGTGAAGCTGAAATAAAAGAGGCTGCAAGAATAGCCAATGCCCATCATTTCATTAGTAGCTTGCCTCATGGTTATGATACTCATGTTGGGATGAGAGGTGTTGACTTAACTCCAGGACAAAAACAGAGAATTGCAATTGCAAGGGTAGTGCTTAAAAATGCTCCTATTTTGTTGTTGGATGAAGCTAGTTCATCAATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACCCTAATCATGGGAAACAAGACCACTATTTTAATAGCACACAGAGCTGCGATGATGAGGCATGTGGACAACATAGTAGTTCTAAATGGAGGAAGGATAGTGGAGGAGGGGACCCATGATTCATTGGTGGCAAAAAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGTAAGGCTTTGCGTCAGCATCGGCTTGTTTAG 4200 0.4171 MMVSRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDLGAETSASQPMEVEEEMEEADEIEPPPAAVPFSRLFACADRLDWFLMVVGSLAAAAHGTALVVYLHYFAKVLRVPQQGPPEEQLHRFKELALTIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRLLVVHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSFNHDGSAPAFVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNMKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDTTMDQIEEAAKIAHAHTFISSLDKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEDGQLVEMGTHDELLTLDGLYAELLRCEEATKLPKRMPVRNYKETATFQIEKDSSESHSFKEPSSPKMIKSPSLQRVSAVFRPSDGFFNSQESPKIRSPPSEKMMENGQSLDSADKEPSIKRQDSFEMRLPELPKIDVQCVHRQTSNGSDPESPVSPLLTSDPKNERSHSQTFSRPDSHSDDLSVKMSETKDARHRKQPSIWRLAELSFAEWLYAVLGSTGAAIFGSFNPLLAYVIGLVVTDYHRIDEVHHLRREIEKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNETGWFDEEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSTAVIVAFLIGVLLHWRLALVALATLPVLCVSAVAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYQLQLNKIFKQSFFHGVAIGFAFGFSQFLLFACNALLLWYTAICVKKGYVDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALKPPNVYGSIELKNVDFCYPSRPELLVLSNFSLKVNGGQTIAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEIKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKALRQHRLV 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0133 1399 Gene3D - 1140 1394 IPR027417 -
Ssu7g0133 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1139 1386 IPR027417 -
Ssu7g0133 1399 Pfam ABC transporter transmembrane region 86 353 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g0133 1399 Pfam ABC transporter transmembrane region 835 1096 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g0133 1399 PANTHER ABC TRANSPORTER B FAMILY 19 1395 - -
Ssu7g0133 1399 MobiDBLite consensus disorder prediction 779 803 - -
Ssu7g0133 1399 Gene3D - 393 640 IPR027417 -
Ssu7g0133 1399 Gene3D ABC transporter type 1, transmembrane domain 796 1138 IPR036640 GO:0005524|GO:0016021
Ssu7g0133 1399 SUPERFAMILY ABC transporter transmembrane region 814 1135 IPR036640 GO:0005524|GO:0016021
Ssu7g0133 1399 Coils Coil 249 269 - -
Ssu7g0133 1399 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 19 1395 - -
Ssu7g0133 1399 Pfam ABC transporter 424 568 IPR003439 GO:0005524
Ssu7g0133 1399 MobiDBLite consensus disorder prediction 19 46 - -
Ssu7g0133 1399 Pfam ABC transporter 1168 1316 IPR003439 GO:0005524
Ssu7g0133 1399 Gene3D ABC transporter type 1, transmembrane domain 70 654 IPR036640 GO:0005524|GO:0016021
Ssu7g0133 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 637 IPR027417 -
Ssu7g0133 1399 MobiDBLite consensus disorder prediction 755 778 - -
Ssu7g0133 1399 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 378 - -
Ssu7g0133 1399 MobiDBLite consensus disorder prediction 755 803 - -
Ssu7g0133 1399 SUPERFAMILY ABC transporter transmembrane region 63 378 IPR036640 GO:0005524|GO:0016021
Ssu7g0133 1399 SMART AAA_5 430 609 IPR003593 -
Ssu7g0133 1399 SMART AAA_5 1177 1364 IPR003593 -
Ssu7g0133 1399 MobiDBLite consensus disorder prediction 695 725 - -
Ssu7g0133 1399 CDD ABC_6TM_Pgp_ABCB1_D2_like 822 1133 - -
Ssu7g0133 1399 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 370 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g0133 1399 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 403 638 IPR003439 GO:0005524
Ssu7g0133 1399 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1150 1387 IPR003439 GO:0005524
Ssu7g0133 1399 MobiDBLite consensus disorder prediction 659 730 - -
Ssu7g0133 1399 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 827 1119 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0133 Ssu-Chr7 2395481 2409822 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0133 59 696 Calmodulin-binding Proteins AT2G36910 43.385 1.15e-161 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0133 K05658 - gmx:100799399 2621.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0133 7 2395481 2409822 Ssu7g0133 7 2395481 2409822 ECH