Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0131 ATGGCTTCCTCTTCCACCATACTGACTGTAAAATTACTAATCGACTCCAAGTGTGAGAAAGTCCTCTTTGCTGAAGCATCAAAAGAGGTCATAGACTTCCTCTTTAGCTTGCTTCGCTTGCCTCTGAGTACTGTCATAAGGCTTCTAAACAAGAATGGCATGGTTGGCAACTTAGGCAATCTTTATCAAAGTGTTGAAAACCTGAGCGAGACTTACATGCAACCAAACCAATATAAGGATGCCCTCTTGAAACCAAGAGCCCTGATTTCTTCAGAGCAAATCTCTGCCATTCTTCCTACAAATGATGACTGTGCCAATGACAACTTGGAAACCTCATTCTACATGTGCCCTAGTCGCTATGGTTATAACGTGACATGTGATAACAATACCCGTTGTCCTCAGTGCAGGAATGTTATGAGCACTGAAATACGTTGTGTTGGCAACAAGATTGCAGAAGATGTATTTCCCAATAAGAATGGGTTTGTGAAAGAGATTGAAACTTACATGGTCATGGATGATTTAGTCATTCAACCCACGTCGACTATATCAAGTATCACCTCACTTAACAAGTTCAATATCAATCAAAGAGCACTTCAGAAAAGCCTATATGAATACTCAGGCTTTGTTGggaattattttcataatatggCAACATTCTTCAGTGGCCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTGATAACATTAGCTACAGGTCCATTTATTGTTGCTGCAGGaggaatatcaaatatattccTCCATAGGCTTGCTGAGAATATTCAAAATGCATATGCTGAAGCAGCCAGCATTGCTGAACAgGCAGTTTCCTATATAAGGACCTTGTATGCATTTACAAATGAAACATTGGCTAAATATTCATATGCAACATCACTGCAAGCTACTCTTAGATACGAAGCTGCTTCCATCGCTGGGGTGCAGAAGAAGTGGATTATAAAGGCTTGGATGGTGgtggattttgagatttgggtGAGGGCAGTGGCTACATTGGGGTGTTTCTTTTGA 1029 0.3839 MASSSTILTVKLLIDSKCEKVLFAEASKEVIDFLFSLLRLPLSTVIRLLNKNGMVGNLGNLYQSVENLSETYMQPNQYKDALLKPRALISSEQISAILPTNDDCANDNLETSFYMCPSRYGYNVTCDNNTRCPQCRNVMSTEIRCVGNKIAEDVFPNKNGFVKEIETYMVMDDLVIQPTSTISSITSLNKFNINQRALQKSLYEYSGFVGNYFHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQNAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYEAASIAGVQKKWIIKAWMVVDFEIWVRAVATLGCFF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0131 342 PANTHER ABC TRANSPORTER B FAMILY 206 307 - -
Ssu7g0131 342 SUPERFAMILY ABC transporter transmembrane region 206 306 IPR036640 GO:0005524|GO:0016021
Ssu7g0131 342 Pfam Protein of unknown function (DUF674) 7 195 IPR007750 -
Ssu7g0131 342 Pfam ABC transporter transmembrane region 207 301 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g0131 342 Gene3D ABC transporter type 1, transmembrane domain 172 326 IPR036640 GO:0005524|GO:0016021
Ssu7g0131 342 Coils Coil 255 275 - -
Ssu7g0131 342 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 206 307 - -
Ssu7g0131 342 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 205 306 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0131 Ssu-Chr7 2377519 2382115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0131 209 301 Calmodulin-binding Proteins AT2G36910 40.860 6.43e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0131 K05658 - gmx:100798512 251.136