Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0115 ATGGCGGGGATGCTACCATACGGCGACGTTGATTCCAGTTTAAGGGCCATGGCCGGTCGCGCCGAGGGTTTCGGCCGCCTCGCCGTCGGTGGCCTCCACGGTCCTCTCTATTTCGTCACCACCCTTCCAGATGATGGGCCCGGGTCCCTTCGCGAAGGATGTCGTAGAAAGGAACCGCTGTGGATTGTTTTTGAAGTTTCTGGTACGATTCATCTTTCATCGTACCTTAGTGTGTCTTCATATAAGACAATAGATGGCAGAGGGCAGAGGATAAAATTGACTGGGAAGGGTTTGAGGCTGAAGGAATGTGAGCACGTGATCATATGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGACGTGGATGGCattcaaatcaaaccaaattctAGGCATATATGGATTGATCGATGCAGCCTTCGTGATTACGACGATGGCCTTATAGACATTACAAGACAAAGCACGGATATTACTGTATCTAGGTGTTACTTTGCACAGCATGACAAGACCATGCTCATTGGAGCTGACCCGTCTCACGTTGGTGATAGATGCATCCGGGTGACCATTCACCATTGTTTCTTTGATGGAACACGGCAAAGACACCCTCGCGTGAGATTTGGAAAAGTTCATCTGTGCAACAATTACACCAGAAACTGGGGGATATATGCTGTTTGTGCTAGTGTGGAATCCCAGGTATACTCTCAATGTAACATATATGAAGCGGGAACTAAGAAAAAgacttttgaattttatactGAGAAGGCGGCAGATAAGGAAGAGCAGAAGTCTGGCTTCATAATATCTGAAGGAGACATGTTTCTGAATGGTGCTCAGCCATGCTTGCTTACTGAAAACAGAGAAGAGTCCATGTTCCATCCTAGCGAATATTACCCAACATGGACGATGGAAGCAGCTGCACATTCTCTCAGAGAAGTGCTCCAGTTATGTACAGGTTGGCAATCCATTTGTAGGCCAGTAGACCATATGGTCTTTAATTAA 999 0.4575 MAGMLPYGDVDSSLRAMAGRAEGFGRLAVGGLHGPLYFVTTLPDDGPGSLREGCRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLCNNYTRNWGIYAVCASVESQVYSQCNIYEAGTKKKTFEFYTEKAADKEEQKSGFIISEGDMFLNGAQPCLLTENREESMFHPSEYYPTWTMEAAAHSLREVLQLCTGWQSICRPVDHMVFN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0115 332 PANTHER PECTATE LYASE 18-RELATED 4 326 IPR045032 GO:0030570
Ssu7g0115 332 Pfam Pectate lyase 76 238 IPR002022 -
Ssu7g0115 332 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Ssu7g0115 332 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Ssu7g0115 332 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Ssu7g0115 332 SUPERFAMILY Pectin lyase-like 18 323 IPR011050 -
Ssu7g0115 332 PANTHER PECTATE LYASE 4 326 - -
Ssu7g0115 332 Gene3D - 7 315 IPR012334 -
Ssu7g0115 332 SMART amb_all 67 245 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0115 Ssu-Chr7 2086101 2088677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0115 44 330 Polysaccharide Lyase AT3G55140 83.275 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0115 K01728 - gmx:100802068 648.662