Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0080 ATGGCATCAACATCTTGCGGTGGTAACAGCTCATTGCCCATGAAAGACGCAGCTTCGAGCTCTCGTGCATATCCTTTTCCTCTAGCAAAATATGAGGAGGTTGTAGACAATCCCCAGCTCTTCATGTTTACCTTGGAGAAGCTTCATGCCTCTATGGGCACCAAGTTCATGATTCCCATTGTTGGAGGAAGAGAACTAGATTTGCATCGCCTCTTTGTTGAAGTGACCTCCCGAGGAGGGATTGCCAAAATAATTAGAGAGAGGAAATGGAAAGACGTAACTTCAGTCTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGCTTCATTGCTCTATCATTATGAACAAATCTACTTTTTTAAAGCCCGTGAATGGGACCCTACCGCTCCTGATGTTTTGCAGAATCAATCAACCCTGCCAGTTCCTCCTCCTCCAAAAATGCAGTTTGTGCAGCCTTTGTCAGAAATTCAACCAGCTGTCTTTCAACAGTCAAATGTTAATGCTGCTAAATTGCCTGAAGTCTCAGCAATGGCAGCATCTTCAGCAGGGTCTCCGGTCATTGGGGTCATTGATGGGAAATTTGAAAGTGGGTATCTAGTTACTGTCACAATTGGTTCAGAGAAACTCAAAGGCGTACTTTATCAAGCTCCACAGAACCCTGTATTACCGGCATCCCATCACAGTGCCTCGGCTAATAACAACAATGCTTCTGCTTCGTTGGGTGTCCATCGTCGGCGACGCAGGAAGAAATCagaaataaaaaggagagaTCCTGCTCATCCAAAACCCAACAGAAGCGGGTACAATTTCTTCTTTGCTGAACAGCATgcaagactaaaactaattcacCATGGAAAGGACAGAGAGATTAGTAGGATGATTGGTGAACTCTGGAACAAGTTAAAACAATCAGATAAGACGGTTTATCAAGAGAAGGCCATGAAGGATAAAGAGAGGTACAGAGCTGAAATGGAGGATTATAGGGAGAGACTGAAGATGGGCCAAGTTATCAGTGATGCTGTGCCGCTTCAACAACGACTTCCTGAGCCAGATACAGACATGATGGATGTTGACATAAAAATGGATGAAACTGATGCACATTCTCCTCAAACTCCAGAGGAGAGCAGTTCTGGTGGAAGTGACTATGAAGATTATAATAAAGCTGAAGAGAGAGGTTTTGATATGGATGCATTGCCTGTTATAGGAGTGGGCGCTGAAACAAGCTATTTGGGTTCAGAAGACAAGTCATCCAAGGGGGGTTTATGA 1287 0.4281 MASTSCGGNSSLPMKDAASSSRAYPFPLAKYEEVVDNPQLFMFTLEKLHASMGTKFMIPIVGGRELDLHRLFVEVTSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYFFKAREWDPTAPDVLQNQSTLPVPPPPKMQFVQPLSEIQPAVFQQSNVNAAKLPEVSAMAASSAGSPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPVLPASHHSASANNNNASASLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLIHHGKDREISRMIGELWNKLKQSDKTVYQEKAMKDKERYRAEMEDYRERLKMGQVISDAVPLQQRLPEPDTDMMDVDIKMDETDAHSPQTPEESSSGGSDYEDYNKAEERGFDMDALPVIGVGAETSYLGSEDKSSKGGL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0080 428 SMART ARID_2 32 122 - -
Ssu7g0080 428 SUPERFAMILY HMG-box 256 339 IPR036910 -
Ssu7g0080 428 Gene3D - 28 135 IPR036431 GO:0003677
Ssu7g0080 428 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 268 335 IPR009071 -
Ssu7g0080 428 Pfam HMG (high mobility group) box 268 335 IPR009071 -
Ssu7g0080 428 SMART hmgende2 267 336 IPR009071 -
Ssu7g0080 428 MobiDBLite consensus disorder prediction 370 406 - -
Ssu7g0080 428 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 402 - -
Ssu7g0080 428 MobiDBLite consensus disorder prediction 230 275 - -
Ssu7g0080 428 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Ssu7g0080 428 SUPERFAMILY ARID-like 34 134 IPR036431 GO:0003677
Ssu7g0080 428 CDD HMGB-UBF_HMG-box 268 332 - -
Ssu7g0080 428 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 402 - -
Ssu7g0080 428 Coils Coil 317 337 - -
Ssu7g0080 428 MobiDBLite consensus disorder prediction 248 262 - -
Ssu7g0080 428 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Ssu7g0080 428 Gene3D High mobility group box domain 252 346 IPR036910 -
Ssu7g0080 428 SMART bright_3 36 127 IPR001606 GO:0003677
Ssu7g0080 428 MobiDBLite consensus disorder prediction 230 247 - -
Ssu7g0080 428 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0080 Ssu-Chr7 1503462 1507089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0080 1 368 ARID Transcription Factor Family AT1G04880 59.791 4.03e-138 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ssu7g0080 ARID 5.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0080 - - gmx:100783284 756.903