Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0079 ATGCCGGAGCTTCGTAGCGGAGTGCGACGTGGCCGTGGCCGTGGCCAGAAGGGGTCGGAGCCGGCAAGGAAGACCGTGAAGGCTCGTGCTGCGGCGGCGCCGGCGAAGGGGAGACCGAGGACTAGATTGGCGGCGAGGGAATTGGAGCGCGAGGAGCCGTTGATCCCGATACCGGAGCCGTTGATCGCGATACCGGAACCGGcgaaggaagagaaaaaggaaaagggtgTGGGCGCGATGGGTGATGAAAGTGGCGGGTTGAGTGCTAACAAGGGTGATGATGATGCCAACACTACACCTTTTCCAGATAGGGTTCAAGTGGGAGGATCGCCTATGTACAAGGTAGAGAGGAAACTGGGTAAAGGTGGATTTGGTCAGGTTTTTGTTGGCCGTCGGGAGCGTGCGACAGGTGCTGGAGCTGTGGAGGTGGCTCTGAAATTTGAACATAGAAACAGTAAGGGCTGTACCTATGGTCCTCCTTATGAGTGGCAAGTATACAACACCCTTGGGGGTAGTTATGGAATACCCAAAGTACACTATAAAGGAAGACAAGGAGAATATTATGTAATGGTTATGGACATACTAGGTCCAAGTTTGTGGGATCTCTGGAATTCCTCAAGCCAGACGATGTCTGCTGAAATGGTCGCATGTATAGCAGTTGAGTCCTTATCAATACTTGAGAAGATGCACTCAAAAGGTTATGTACACGGAGATGTAAAACCAGAGAACTTTTTACTTGGCCAGCCAGCTACAGTGCAAGAGAAGAAACTGTTTCTTGTTGACCTTGGATTAGCAACAAAATGGAGAGACACCTCCAGTGGACTGCATGTTGAATATGATCAACGTCCTGATATGTTTAGAGGGACTGTTCGATATGCTAGTGTTCATGCTCATTTGGGGAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCATACACACTCATCTTCCTTCATAAGGGCCGATTACCATGGCAAGGTTATCAGGGTGATAGCAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGGACATCTCCTGAGATACTGTGCTGCATGTGCCCTCCTCCTTTTAAGCAATTTCTTGAGATTGTAGtgaatatgaaatttgatgaagAACCTAATTATTCCAAGCTAATATCTTTGTTTGATGGTACGATTGGACCCAATCCGGCATTGCGGCCAATTAATACTGAAGGTGCCCAAAAGGTTGGGCAAAAGCGGGGTAGATTGAATATTGAGGAAGATGATTCACAGCCAAAAAAGAAGGTTCGTTTAGGGGTTCCTGCTACACAATGGATTTCAATTTACAATGCAAGACTACCAATGAAACAAAGGTATCATTACAATGTGGCTGATGCAAGATTAGAACAGCATGTCGACAGAGGGGTTGCAGATGGCCTTCTTATTAGTTGCGTGTCCTCTTGTTGCAGTCTTTGGGCCCTTATTATGGATGCCGGAACTGGTTTTACAGCTCAAGTTTACAAGTTGTCCCCTTTTTTCTTGCACAAGGAATGGATCATGGAGCAGTGGGATAAAAACTATTACATTACTTCCATTGCAGGGACCGATAATGGCAGCTCTCTTGTGGTGATGTCAAAAGGTACGCAGTATACTCAACAATCCTACAAAGTAAGCGAATCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAAAGAAGGTTTTCATGTCACCTCAATGGCAACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCTCGCAATGCTGGATTCAGTAAACAGGTGGTCGAACTTGATTTTCTCTATCCAAGTGAGGGCATCCATAAACGTTGGGATAAGGGTTATAGGATTACAGCAACTGCAGCTACATTGGATCAATCTGCTCTTATATTAAGCATTCCGAGGCGCAAGCCCAGTGATGAAACTCAGGAAACTCTACGTACATCTCAATTTCCCAGCACGCATGTTAAGGACAAATGGTCGAAAAACCTTTACCTTGCCTGTTTGTGCTACGGCCGCACAGTATGCTGA 2010 0.4542 MPELRSGVRRGRGRGQKGSEPARKTVKARAAAAPAKGRPRTRLAARELEREEPLIPIPEPLIAIPEPAKEEKKEKGVGAMGDESGGLSANKGDDDANTTPFPDRVQVGGSPMYKVERKLGKGGFGQVFVGRRERATGAGAVEVALKFEHRNSKGCTYGPPYEWQVYNTLGGSYGIPKVHYKGRQGEYYVMVMDILGPSLWDLWNSSSQTMSAEMVACIAVESLSILEKMHSKGYVHGDVKPENFLLGQPATVQEKKLFLVDLGLATKWRDTSSGLHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDSKSFLVCKKKMGTSPEILCCMCPPPFKQFLEIVVNMKFDEEPNYSKLISLFDGTIGPNPALRPINTEGAQKVGQKRGRLNIEEDDSQPKKKVRLGVPATQWISIYNARLPMKQRYHYNVADARLEQHVDRGVADGLLISCVSSCCSLWALIMDAGTGFTAQVYKLSPFFLHKEWIMEQWDKNYYITSIAGTDNGSSLVVMSKGTQYTQQSYKVSESFPFKWINKKWKEGFHVTSMATAGSRWGVVMSRNAGFSKQVVELDFLYPSEGIHKRWDKGYRITATAATLDQSALILSIPRRKPSDETQETLRTSQFPSTHVKDKWSKNLYLACLCYGRTVC 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0079 669 MobiDBLite consensus disorder prediction 1 51 - -
Ssu7g0079 669 CDD STKc_CK1 112 383 - -
Ssu7g0079 669 ProSiteProfiles Protein kinase domain profile. 113 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0079 669 Pfam Protein kinase domain 113 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0079 669 PANTHER CASEIN KINASE I-LIKE PROTEIN 65 642 - -
Ssu7g0079 669 PANTHER CASEIN KINASE-RELATED 65 642 - -
Ssu7g0079 669 ProSitePatterns Protein kinases ATP-binding region signature. 119 146 IPR017441 GO:0005524
Ssu7g0079 669 Gene3D Transferase(Phosphotransferase) domain 1 88 425 - -
Ssu7g0079 669 MobiDBLite consensus disorder prediction 65 79 - -
Ssu7g0079 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Ssu7g0079 669 SUPERFAMILY Protein kinase-like (PK-like) 113 389 IPR011009 -
Ssu7g0079 669 MobiDBLite consensus disorder prediction 1 24 - -
Ssu7g0079 669 MobiDBLite consensus disorder prediction 65 108 - -
Ssu7g0079 669 SMART serkin_6 113 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0079 Ssu-Chr7 1465507 1470976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0079 92 341 AGC Kinase Gene Family AT3G08720 22.925 3.01e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Ssu7g0079 Pkinase 2.1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0079 - - gmx:100783819 1182.55