Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0057 ATGACTGGACAGTTGACTCAAAAAAGTGATGTCTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAGCCGGTTGACCATACCATGCCTCGAGGACAGCAGAGTCTTGTCACATGGgCTACTCCAAGATTAAGTGAAGATAAAGTGAAACAGTGCGTAGACCCAAAACTGAAGGGAGAATATCCCCCTAAAGGAGTTGCTAAgCTTGCAGCTGTTGCAGCACTGTGCGTGCAGTATGAAGCTGAGTTTAGGCCAAATATGAGCATTGTTGTTAAAGCACTCCAACCACTTCTGAAGTCTCCTGCTCCTGCTCCAGAAAGTTGA 333 0.4444 MTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKSPAPAPES 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0057 110 Gene3D Transferase(Phosphotransferase) domain 1 1 106 - -
Ssu7g0057 110 Pfam Protein tyrosine and serine/threonine kinase 3 97 IPR001245 GO:0004672|GO:0006468
Ssu7g0057 110 PANTHER BNAC08G48860D PROTEIN 1 107 - -
Ssu7g0057 110 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 107 - -
Ssu7g0057 110 ProSiteProfiles Protein kinase domain profile. 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0057 110 SUPERFAMILY Protein kinase-like (PK-like) 3 101 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0057 Ssu-Chr7 859805 860385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0057 1 109 Receptor kinase-like Gene Family AT3G58690 53.636 1.26e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Ssu7g0057 PK_Tyr_Ser-Thr 4e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0057 K13436 - thj:104800812 205.297