Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0045 ATGCCGAGCTTCGATTCACAATTACCCAATTCCAATGCATGCTATACAAAGGGAAGCACAATTGATTGTTTTCGTGTGTCTGACTTTGATCAACCAGTTGGATATCGCATAGAGGATGCTGTTTCCTTGAGTGGAAACTCAGTTTTTGACTCACTAAAAGTAAATAACCAAACAATTTCTCGGGGTCCTGTTCAAGTTGGTTCCTATAAGttTCCAACTTCACTTGATAAAAGCCCATTGACAAACCAATCAGAGCGACAAAGTTTGCAATTACAAAAGGTTCAATCCTCAAATCAGGTTAGTGTTGATACAGAACACCAGGAAGAGTCTGCCATGGCTGATGCCAGTCCTAGAACTGATATTTCTACAGATGTTGACACTGATGATAAGAATCCACGGTTTGATAGAAGTCAGTCCCTTGTTGCTGTCGCTTCTGACTCCAGTGACAGATCAAAGGATAAAACAGATCAGAAGACTCTCCGCAGGCTTGCTCAGAATCGTGAAGCTGCAAGAAAAAGCCGGTTGAGAAAGAAAGCTTATGTTCAACAGCTGGAAAGTAGTCGCTTGAAGTTGACCCAACTGGAGCAAGAGCTTCAGCGAGCTAGGCAGCAGGGAGTCTTTATATCAAGCTCAGGTGATCAAGCACATTCAATGAGTGGAAATGGGGCTATGGCTTTTGATGTAGAATATGCAAGGTGGTTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGCTGTAAATTCTCACGCAAGTGATACAGAACTTCGCATGATTATCGATGGTATAATGGCACATTATGATGAGATATTTAAGCTGAAGGGCAATGCGGCTAAGGCTGATGTCTTCCATTTGTTGTCTGGAATGTGGAAAACACCAGCAGAGAGGTGTTTTCTATGGCTTGGTGGTTTTCGTTCATCTGAACTCCTCAAGCTCCTGGTAAATCAGTTGGAACCTCTGACAGAGCAGCAGTTAGTGGGTATTACCAACTTGCAGCAATCTTCCCAACAGGCAGAAGATGCATTGTCTCAGGGCATGGAAGCATTGCAACAGTCCCTTTCTGAGACATTATCCTCTGGATCACTTGGCTCCTCTGGTTCATCAGGGAATGTGGCAAATTACATGGGTCAAATGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGGTTCATTAAGCAGGCTGACAATTTGCGCCAGCAGACGCTGCAACAAATTCACCGCATATTAACAACTCGGCAATCGGCTCGCGCACTGCTTGCAATTAATGACTACTTTTCTAGGCTGCGTGCTCTTAGCTCTCTTTGGCTTGCCCGCCCAAGAGACTGA 1332 0.4444 MPSFDSQLPNSNACYTKGSTIDCFRVSDFDQPVGYRIEDAVSLSGNSVFDSLKVNNQTISRGPVQVGSYKFPTSLDKSPLTNQSERQSLQLQKVQSSNQVSVDTEHQEESAMADASPRTDISTDVDTDDKNPRFDRSQSLVAVASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGVFISSSGDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRAAVNSHASDTELRMIIDGIMAHYDEIFKLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLSETLSSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIKQADNLRQQTLQQIHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0045 443 Coils Coil 177 204 - -
Ssu7g0045 443 MobiDBLite consensus disorder prediction 121 135 - -
Ssu7g0045 443 Coils Coil 234 254 - -
Ssu7g0045 443 MobiDBLite consensus disorder prediction 71 106 - -
Ssu7g0045 443 CDD bZIP_HBP1b-like 158 210 - -
Ssu7g0045 443 MobiDBLite consensus disorder prediction 63 160 - -
Ssu7g0045 443 Pfam bZIP transcription factor 158 198 IPR004827 GO:0003700|GO:0006355
Ssu7g0045 443 Gene3D - 157 206 - -
Ssu7g0045 443 PANTHER TRANSCRIPTION FACTOR TGA9 48 443 - -
Ssu7g0045 443 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 48 443 - -
Ssu7g0045 443 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 161 176 IPR004827 GO:0003700|GO:0006355
Ssu7g0045 443 Pfam Seed dormancy control 240 315 IPR025422 GO:0006351|GO:0043565
Ssu7g0045 443 SMART brlzneu 154 217 IPR004827 GO:0003700|GO:0006355
Ssu7g0045 443 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 156 200 IPR004827 GO:0003700|GO:0006355
Ssu7g0045 443 SUPERFAMILY Leucine zipper domain 158 201 IPR046347 GO:0003700|GO:0006355
Ssu7g0045 443 ProSiteProfiles DOG1 domain profile. 223 440 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0045 Ssu-Chr7 705734 716757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0045 112 443 bZIP Transcription Factor Family AT3G12250 79.819 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu7g0045 DOG1 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0045 K14431 - gmx:100816123 725.702