Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0043 ATGAGCGTTACTATTCTTATTATTTGTGTTACTGTTATCCTTCTCCCCTTGCTGCAGCTGCCGTACGTGTCTGCTCAGACTCAGAATAATGTTAGCATCGGTAAGACACTTGTTGCAGGTAACGGGGGTGCACAATGGCTTTCTCCATCAGGAGAGTTTGCATTTGGATTTCGTCAGCTTGAGAATGGCCTTTTCTTGCTTGCCATATGGTACCAAAATATACCTCATGACTCTTTCATTTGGTATGCAAATGGAGACAACCCTGCTCCTAAAGGGTCAAAACTGGAGCTAAATGAATACAGTGGACTAGTTCTGAAGAGCCCTCAAGGTGTTGGGCTATGGACATCACAGCCCATATCAGGTACAATTTCCTATGGACTAATGAACGACACAGGCAACTTCCAGCTGCTGGATAAGAATTCGCAGGTGTTGTGGGAAAGTTTCGGTAATCCAACTGATACCTTGGTGCCAACTCAAATCATGGAGGTAAAAGGCACGCTTTCATCTCGGCAGAAAGAGGCCAACTTCTCACGAGGAAGGTTCCAATTTCGCTTGCTTGAGGATGGTAATGCTGTGCTTAATCCTATAAATTTGCCTACCAATTATACTTATGAGGCTTACTACATCAGTGTCACTTATGATCCGGCCAATAAAACAAACTCTGGTTACCGTGTGATTTTCGATAATTCAGGATTCTGCTGGAAGAAAAAGCTGCCACTCTCAAATGGAAGACGGGATAGAGCAGTAGGGGGGTCTGCTTTCATTAAGTTGATGAGAAATGGTGTTTCATCAACAAGTCCTCCTAATCCATTCATAGAAGAcaagaaatatgaaaaagatcAAGGAACTTTGATAACTGTAATATCAGTCCTTTTGGGAGGTTCTGTCTTTGTCAATTTCCTGCTGGTCAGTGCAGTATGTATTGGTTTCTACTTCTACTATAGCAAAAAAAGTTCTACCAACAAAATTGTTGCAGAGAGCAATTTGCGCAGTTTCACCTTTGGAGAGCTTGTGCAAGCAACAAATAACTTCAAAGAAGAATTGGGAAGGGGGTCTTGTGGCATTGTCTTTAAAGGAACAACAGATTTGGCTACTATTGCAGTCAAGAAATTAGACAAGATGCTCAAAGACAGCGATAAGGAATTCAAAACAGAAGTGAATGTGATAGGCCAAACTCATCACAAAAATCTGGTTCGCCTTCTTGGATATTGTGACGAGGGAGAACACCGGATTCTGGTGTATGAGTTCTTGAGCAATGGCACTTTAGCAAACTTCCTCTTTGGAGATTTCAAACGAAATTGGAACCAAAGAGTCCAGATTGCCTTTGGGATTGCAAGAGGGCTGGTTTACTTGCACGACGAATGCTGCACCCAGATCATCCATTGCGACATAAAGCCACAAAACATACTTCTTGATGAGCATTACAATGCAAGAATATCAGATTTTGGGTTGTCAAAGCTACTAATGATTAATCAAAGCCGCACAGAAACTGGCATTCGAGGAACAAAAGGGTATGTTGCGCCAGACTGGTTCAGGAGTGCACCAATCACTACCAAGGTTGATGTCTACAGTTTTGGTGTGCTGCTTCTGGAGATCATTTGCTGCCGGAGAAATGTAGATGGTGAAGTTGGCAATGAAGAGAAGGCCATTTTAACTGATTGGGCTTATGATTGCTATAAGGCTGGAAGAATTGACATCCTGGTTGAAAATGATGATGAGGCTATCAGTGACATAAATAGGCTGGAAAGGTTTGTGATGGTTGCTATTTGGTGCCTTCAAGAGGATCCTTCTCTAAGGCCAACAATGAAGAAGGTGATGCTGATGCTGGAAGGAATAGCTCCAGTCACAATTCCACCAAGTCCCTGCCCTTATACCTCTGTGTCTGTTAGTTGCGGTTGA 1899 0.4239 MSVTILIICVTVILLPLLQLPYVSAQTQNNVSIGKTLVAGNGGAQWLSPSGEFAFGFRQLENGLFLLAIWYQNIPHDSFIWYANGDNPAPKGSKLELNEYSGLVLKSPQGVGLWTSQPISGTISYGLMNDTGNFQLLDKNSQVLWESFGNPTDTLVPTQIMEVKGTLSSRQKEANFSRGRFQFRLLEDGNAVLNPINLPTNYTYEAYYISVTYDPANKTNSGYRVIFDNSGFCWKKKLPLSNGRRDRAVGGSAFIKLMRNGVSSTSPPNPFIEDKKYEKDQGTLITVISVLLGGSVFVNFLLVSAVCIGFYFYYSKKSSTNKIVAESNLRSFTFGELVQATNNFKEELGRGSCGIVFKGTTDLATIAVKKLDKMLKDSDKEFKTEVNVIGQTHHKNLVRLLGYCDEGEHRILVYEFLSNGTLANFLFGDFKRNWNQRVQIAFGIARGLVYLHDECCTQIIHCDIKPQNILLDEHYNARISDFGLSKLLMINQSRTETGIRGTKGYVAPDWFRSAPITTKVDVYSFGVLLLEIICCRRNVDGEVGNEEKAILTDWAYDCYKAGRIDILVENDDEAISDINRLERFVMVAIWCLQEDPSLRPTMKKVMLMLEGIAPVTIPPSPCPYTSVSVSCG 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0043 632 SMART serkin_6 342 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0043 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Ssu7g0043 632 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 27 231 - -
Ssu7g0043 632 ProSiteProfiles Protein kinase domain profile. 342 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0043 632 CDD STKc_IRAK 348 612 - -
Ssu7g0043 632 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 233 631 - -
Ssu7g0043 632 Pfam D-mannose binding lectin 79 164 IPR001480 -
Ssu7g0043 632 Gene3D Phosphorylase Kinase; domain 1 309 416 - -
Ssu7g0043 632 ProSiteProfiles Bulb-type lectin domain profile. 22 149 IPR001480 -
Ssu7g0043 632 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 194 IPR036426 -
Ssu7g0043 632 SMART blect_4 28 151 IPR001480 -
Ssu7g0043 632 Gene3D Transferase(Phosphotransferase) domain 1 417 616 - -
Ssu7g0043 632 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 27 231 - -
Ssu7g0043 632 Pfam Protein kinase domain 344 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0043 632 Gene3D - 23 150 IPR036426 -
Ssu7g0043 632 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 233 631 - -
Ssu7g0043 632 SUPERFAMILY Protein kinase-like (PK-like) 321 610 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0043 Ssu-Chr7 684019 686436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0043 324 611 Receptor kinase-like Gene Family AT1G60800 42.230 9.94e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu7g0043 Pkinase 8.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0043 - - gmx:100811299 722.62