Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0035 ATGATTTCAAACTCTAGCATAAACGTTAACAGAAACAAGGAAAGTTCAGATTGTAGCGAAATCAATTTTGCATTTGAAGCAGTAAAACGCGCGAGGCATGAAGATAATGCAGCAAGGTCTTTTCAGAAGTTCAAAGGCGTTGTGCCTCAACAAAATGGGAACTGGGGTGCACAAATATACGCAAACCACCAAAGAATCTGGTTGGGGACATTCAAATCTGAAAGAGAGGCTGCAACGGCTTATGACAGCGCCAGCATAAAACTTAGAAGCGGAGAAAGTCATCACAGAAACTTTCCATGGAACGATCAAACAGTTCAAGAGCCTCAGTTTCAAAGCCATTATAGCGCAGAAACGGTGCTGAGCATGATTAGAGATGGCACCTACCCATCAAACTTTGCTACATTTCTTGGCACTCGTCAAGGCGTTGCCAAACACGTAAGTTTGAAGGGTGAGGAACAGTTTTGTTGCACCCAACTTTTTCAGAAAGAATTAACACCAAGTGACGTGGGCAAGCTCAACAGGCTTGTCATCCCAAAAAAACATGCAGTTACCTATTTTCCTCGCGTTTGTGGCAGTGCAGAAGGGAACGACGAGAGTGTTGACGTGGAGGTTGTCTTTTATGACAAACTCATGCGATTGTGGAAGTTCCGATACTGCTATTGGAAGAGCAGCCAAAGTTACGTGTTCACGAGAGGGTGGAATCGGTTTGTCAAGGATAAGAAACTAAAGGCTAAAGATATCATTGTGTTTTTTATGTGTCGGGGACAGGGAGAAGCTTTTGCATTGATCGATGTGATTTATAATAATGCAGATGAGAGAAGGCGGTGTTTTGGGGAGAGCAAGGGAGATACGAAACAGGTTTTGGGAAACGAGTTAGCTTGCAGTGAACATGAAGAGACAAAGCTTGGAAAGGATTTGAATGCACATAAGGGTTTGAGGCTCTTTGGTGTGTGTATCACGTGA 963 0.4341 MISNSSINVNRNKESSDCSEINFAFEAVKRARHEDNAARSFQKFKGVVPQQNGNWGAQIYANHQRIWLGTFKSEREAATAYDSASIKLRSGESHHRNFPWNDQTVQEPQFQSHYSAETVLSMIRDGTYPSNFATFLGTRQGVAKHVSLKGEEQFCCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPRVCGSAEGNDESVDVEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDIIVFFMCRGQGEAFALIDVIYNNADERRRCFGESKGDTKQVLGNELACSEHEETKLGKDLNAHKGLRLFGVCIT 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0035 320 Pfam B3 DNA binding domain 160 255 IPR003340 GO:0003677
Ssu7g0035 320 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 306 IPR044800 GO:0003700
Ssu7g0035 320 SUPERFAMILY DNA-binding pseudobarrel domain 158 254 IPR015300 -
Ssu7g0035 320 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Ssu7g0035 320 ProSiteProfiles B3 DNA-binding domain profile. 160 269 IPR003340 GO:0003677
Ssu7g0035 320 ProSiteProfiles AP2/ERF domain profile. 43 99 IPR001471 GO:0003700|GO:0006355
Ssu7g0035 320 CDD AP2 42 101 IPR001471 GO:0003700|GO:0006355
Ssu7g0035 320 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 306 - -
Ssu7g0035 320 Gene3D - 156 275 IPR015300 -
Ssu7g0035 320 SUPERFAMILY DNA-binding domain 43 100 IPR016177 GO:0003677
Ssu7g0035 320 SMART B3_2 160 266 IPR003340 GO:0003677
Ssu7g0035 320 Pfam AP2 domain 43 89 IPR001471 GO:0003700|GO:0006355
Ssu7g0035 320 SMART rav1_2 43 105 IPR001471 GO:0003700|GO:0006355
Ssu7g0035 320 CDD B3_DNA 159 258 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0035 Ssu-Chr7 621019 621981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0035 43 319 RAV Transcription Factor Family AT1G50680 51.090 3.73e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu7g0035 B3 2.3e-25 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0035 K09287 - gmx:102660503 479.174