Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0033 ATGGATCGCAAGAGAGGGAGGCCTGAATCTGCCTTCAATGTTAATGGCGGCGCCAAGAAATCCAGGCCAGAAACGGACTCCTTTCCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACCTCTGGCTGTCCATTTGGTGAAGGATGTCATTTCCTGCATTATGTTCCTGGTGGCTTCAAAGCTGTGTCTCAGCTGATCAATGTTGGTAGCAATCCTGGTATTCCTCAAGTTGGTCGAAATCCTGTTCCCCCATCCTTCCCAGATGGGTCTTCTCCTCCAGTTGTTAAAACACGATTGTGCAACAAGTTTAATTCAGCTGAAGGTTGCAAATTTGGTGACAAATGTCACTTTGCCCATGGTGAGTGGGAGCTTGGCAGGCCTACCATCACATCATATGAAGATCCCCGTATTTTGGGACAAATGCCAAGCAGCAGGGTAGGTGGGCGAGCTGAGCCCCCAATTCCAGCTCATGGAGCTGCTTCCAGCTTTGGAGCCTCAGCTACTGCAAAAATTAGTATCAATGCTTCGCTAGCTGGAGCTGTCATTGGAAAAAATGGTGTCAACTCTAAGCAAATATGTCGTGTAACAGGAGCTAAACTTTCCATAAGGGATCATGACTCGGATCCTAACCTTAGAAACATTGAGCTTGAAGGCAGTTTTGATCAGATCAAACAAGCCAGTGCCATGGTTCACGAACTTATTCTAAATGTCAGTTCTGCCTCTGGGCCTCCAATGAAAAGCATTACTACACAGGACTTCTGCTTCTTCAAGCAACTTCAAGACTAA 801 0.4632 MDRKRGRPESAFNVNGGAKKSRPETDSFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGFKAVSQLINVGSNPGIPQVGRNPVPPSFPDGSSPPVVKTRLCNKFNSAEGCKFGDKCHFAHGEWELGRPTITSYEDPRILGQMPSSRVGGRAEPPIPAHGAASSFGASATAKISINASLAGAVIGKNGVNSKQICRVTGAKLSIRDHDSDPNLRNIELEGSFDQIKQASAMVHELILNVSSASGPPMKSITTQDFCFFKQLQD 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0033 266 MobiDBLite consensus disorder prediction 1 35 - -
Ssu7g0033 266 CDD KH-I 173 236 - -
Ssu7g0033 266 Gene3D K Homology domain, type 1 167 257 IPR036612 GO:0003723
Ssu7g0033 266 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
Ssu7g0033 266 Gene3D - 94 131 - -
Ssu7g0033 266 Pfam KH domain 174 236 IPR004088 GO:0003723
Ssu7g0033 266 ProSiteProfiles Type-1 KH domain profile. 171 235 - -
Ssu7g0033 266 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 161 242 IPR036612 GO:0003723
Ssu7g0033 266 SMART kh_6 170 240 IPR004087 GO:0003676
Ssu7g0033 266 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 52 3 260 - -
Ssu7g0033 266 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Ssu7g0033 266 SMART c3hfinal6 101 126 IPR000571 GO:0046872
Ssu7g0033 266 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Ssu7g0033 266 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Ssu7g0033 266 PANTHER CCCH ZINC FINGER/TIS11-RELATED 3 260 IPR045877 GO:0003729
Ssu7g0033 266 ProSiteProfiles Zinc finger C3H1-type profile. 100 127 IPR000571 GO:0046872
Ssu7g0033 266 SUPERFAMILY CCCH zinc finger 97 130 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0033 Ssu-Chr7 581642 587206 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu7g0033 KH_1 2.2e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0033 - - gmx:100818781 494.197