Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0025 atGTACCCGTCTTCGTCTTCGTCGTCGTCCTCGTCTTCCCAGTCGATGAGCCAAGCGGGGGCGGGGCTCACGCGGTACGGCTCCGCACCGGGGTCTCTGCTGACGAGCACGGTGGATGCGGTGATAGGAGGATCGCGCCCCTACTATTCCGGAGGAGACTCTTCCGAGTCAACGTGCAAAGAGCAGAGATCTTACGACAACCAGGCCTTCGGATCCGCCTTGCTCCGCCAGAAAAGCTCCCCCGCCGGCTTCCTCTCCAATCACAATGCGGGGTTCACAATCACGCGGGGTTCAGTGTCAACTTGTTCGAGGTTGAAGACTCAATTGAGCTTCACGGGTCACTGCCAAGACACTCTTTCTCGCGCGGAGAATGGTAATAATGTTGTGGTTGGTGATCCCATGGGCGCTGCCACCACCAGCTTCGGAATCGACGCCTGGGACAATTCTAATTCCATCGCCTTCTCTGCTCCGCCAAATAAGCGCTCCAAAAATACCAACGATGCCGACATTCTACATTGCCTCAATGCCTTGGAATCTCAGTTTAGTCTGCCACAAACAACTCTGGAAATGGCAACGGTGGACAACATATTGCGTATTCCTGAAGATTCTGTGCCTTGTAAAATCCGTGCTAAGCGAGGTTGTGCTACTCATCCGCGTAGCATTGCAGAGCGGGAGAGAAGAACAAGAATAAGTGGGAAGCTGAAGAAATTACAGGACCTTGTACCTAATATGGATAAGCAAACAAGCTATGCAGACATGCTGGATTTGGCCGTTCAACATATTAAAGGTCTTCAAACTCAGGTTCAGAAGCTTCACAAAGAACTTGAGAATTGCACTTGCGGATGCAAACCAATCaaataa 861 0.5134 MYPSSSSSSSSSSQSMSQAGAGLTRYGSAPGSLLTSTVDAVIGGSRPYYSGGDSSESTCKEQRSYDNQAFGSALLRQKSSPAGFLSNHNAGFTITRGSVSTCSRLKTQLSFTGHCQDTLSRAENGNNVVVGDPMGAATTSFGIDAWDNSNSIAFSAPPNKRSKNTNDADILHCLNALESQFSLPQTTLEMATVDNILRIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQTQVQKLHKELENCTCGCKPIK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0025 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 214 264 IPR011598 GO:0046983
Ssu7g0025 286 Pfam Helix-loop-helix DNA-binding domain 219 265 IPR011598 GO:0046983
Ssu7g0025 286 MobiDBLite consensus disorder prediction 1 31 - -
Ssu7g0025 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 217 279 IPR036638 GO:0046983
Ssu7g0025 286 Gene3D - 215 281 IPR036638 GO:0046983
Ssu7g0025 286 SMART finulus 220 270 IPR011598 GO:0046983
Ssu7g0025 286 MobiDBLite consensus disorder prediction 1 22 - -
Ssu7g0025 286 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 22 279 - -
Ssu7g0025 286 CDD bHLH_AtbHLH_like 219 271 IPR045239 -
Ssu7g0025 286 PANTHER TRANSCRIPTION FACTOR BHLH129 22 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0025 Ssu-Chr7 435509 440816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0025 19 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 44.857 1.29e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g0025 HLH 4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0025 - - vra:106771988 419.083