Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0017 ATGGGATCATGCCTCTCGGTCCTGGGGGCATCGGCTCCTGTTGAAGCTTGCGATGAATCATCATCCACTCCCACAACTTCCTCCGTGGAAATGCGCTTGCACAGGGTTCCTGGCAGATTCTTCTTGAACGGTTCCTCCGAGGTTGCTTCCTTGTTCTGTAAGCAAGGTCGAAAAAGGATCAACCAGGATGCTATGCTTCTTTGGGAGAACTTTTCTTCAACGAACGACACCGTTTTTTGTGGTGTTTTTGATGGCCACGGACCTCATGGCCATACGGTTGCAAAGAAAGTCAGGGATTCTTTCCCTTTAAAGCTGATTGCTCAATGGAATTTGCAtcctaacaacaacaacaacaacaacaacaataataataataataataataatcatcgtACATCGGCCCTTGCCCCAAGTCATTTTGGTACGCTCAGAGAATCGTTTGTCAAGGCTTGTAAGGTGATGGACAGAGAACTCAAACTGCACCATCAAATTGATTGCTCTTGTAGTGGCACTACGGCTGTTACCTTGCTCAAGCTGGGGCACGACCTTGTTATTGCCAATGTGGGGGACTCCAGAGCTGTATTGGGCACCCGAGATCTTCATGGCTCCCTTATTGCTGTTCAGTTGACCACTGACCTTAAGCCAGATCTTCCaaGGGAAGCAGAGAGGATAAGGATTTGTAAAGGAAGGGTGTTTTCCCTTAAAAATGAACCAGGGGTTGCTCGAGTTTGGCTGCCCAACGTTGATTCCCCTGGGCTTGCCATGGCACGGGCTTTTGGAGATTTTTGTCTCAAGGACTATGGAGTCATCTCTGTTCCTGATGTCTCATATCACCGCCTCACTCACAAGGACCAATTTGTGGTATTAGCCACTGATGGGGTATGGgatgttttatcaaacaaagaAGTTGTGGGCATTGTGGCATCTGCTCCACGCTCTTCAGCGGCTCGAATACTGGTTGAGTCAGCTGTTCAGGCATGGAGAACGAAACTTCCCTCTTCTAAGGTTGATGATTGCGCTGTAGTTTGCCTCTTCTTTGATTCAGAGTCAGCATCTAACAACAAAGAGCCATCAAATGACCATTCTCACATTGGCAGTAGGACTACTTAG 1110 0.4514 MGSCLSVLGASAPVEACDESSSTPTTSSVEMRLHRVPGRFFLNGSSEVASLFCKQGRKRINQDAMLLWENFSSTNDTVFCGVFDGHGPHGHTVAKKVRDSFPLKLIAQWNLHPNNNNNNNNNNNNNNNNHRTSALAPSHFGTLRESFVKACKVMDRELKLHHQIDCSCSGTTAVTLLKLGHDLVIANVGDSRAVLGTRDLHGSLIAVQLTTDLKPDLPREAERIRICKGRVFSLKNEPGVARVWLPNVDSPGLAMARAFGDFCLKDYGVISVPDVSYHRLTHKDQFVVLATDGVWDVLSNKEVVGIVASAPRSSAARILVESAVQAWRTKLPSSKVDDCAVVCLFFDSESASNNKEPSNDHSHIGSRTT 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0017 369 SUPERFAMILY PP2C-like 48 347 IPR036457 -
Ssu7g0017 369 Gene3D - 44 348 IPR036457 -
Ssu7g0017 369 CDD PP2Cc 48 346 IPR001932 -
Ssu7g0017 369 Pfam Protein phosphatase 2C 53 312 IPR001932 -
Ssu7g0017 369 PANTHER ALPHABET, ISOFORM E-RELATED 1 354 - -
Ssu7g0017 369 MobiDBLite consensus disorder prediction 112 131 - -
Ssu7g0017 369 SMART PP2C_4 39 344 IPR001932 -
Ssu7g0017 369 ProSiteProfiles PPM-type phosphatase domain profile. 48 346 IPR001932 -
Ssu7g0017 369 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 1 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0017 Ssu-Chr7 242564 244147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0017 33 363 PP2C-type Phosphatase Gene Family AT1G16220 57.637 9.63e-144 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0017 - - gmx:100816114 533.102