Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0013 ATGACCATGGCGGCTGCATTTACGACTACAACTGCAACACTGAGACTGTCAAATGTTCCAGAAAGCAAAGCTTTGAAGCGTAACCCTAATCCTAACCTTAAGCTTATGCGGGGGTTTGGGTTTGGCGGTTGTTCTGGAGTGGCAGTGAgtgtgaaagagaaagaaagaaaaggcgCAACCAGGGGAAGAGCGAGGAGTGTGAGGGTGAGGGTGAGGGCGAGTTCTTCGGAGGAGGCATCTCTGCAGTCAAAAGTGACTAAGAAAGTATACTTTGACGTCAGTATCGGGAATCCAGTTGGGAAGCTTGCTGGACGGATTGTGATTGGACTGTACGGTGACGATGTCCCCCAAACAGCTGAGAACTTCCGTGCCCTTTGTACCGGAGAGAAGGGCTTTGGCTATAAGGGCTCTACTTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGCGACTTTGACAAAGGAAATGGTACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAAACGTGAGTCACTCACTCACGCCCTTCACCCCTCCCACATTACATTTCATAATAACCTCTCCCCTTCCTCCTTTAATAGTTTAAATCAGCAAACAATTCTTCTTGCTTCTCATGCGTTTCTTTTTGGTTcggaagatattattattaaacaaatgcCACTGGAGCATTTTCTCTGCTTAGATACCAtagattttctcattttaacttCCACCATCTCTGCATTTTCTTCTATTCccatatttacatattattgcAAATATAATACTCATGTACAATATCTCTAG 807 0.399 MTMAAAFTTTTATLRLSNVPESKALKRNPNPNLKLMRGFGFGGCSGVAVSVKEKERKGATRGRARSVRVRVRASSSEEASLQSKVTKKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKRESLTHALHPSHITFHNNLSPSSFNSLNQQTILLASHAFLFGSEDIIIKQMPLEHFLCLDTIDFLILTSTISAFSSIPIFTYYCKYNTHVQYL 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0013 268 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 134 151 IPR020892 GO:0003755|GO:0006457
Ssu7g0013 268 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 139 151 IPR002130 GO:0000413|GO:0003755
Ssu7g0013 268 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 125 IPR002130 GO:0000413|GO:0003755
Ssu7g0013 268 SUPERFAMILY Cyclophilin-like 84 179 IPR029000 -
Ssu7g0013 268 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 51 178 - -
Ssu7g0013 268 Gene3D - 73 210 IPR029000 -
Ssu7g0013 268 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 100 253 IPR002130 GO:0000413|GO:0003755
Ssu7g0013 268 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 103 192 IPR002130 GO:0000413|GO:0003755
Ssu7g0013 268 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 5, CHLOROPLASTIC 51 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0013 Ssu-Chr7 159744 160739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0013 104 172 U-box Gene Family AT5G67530 52.174 6.19e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0013 K03768 - gmx:100777088 242.662