Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0010 ATGGGTTGTTTTTCGTGTTTCGATTCGAGGGAGGATGAGAAGCTGAATCCCAATCCTCAGCAGGAAACCCATCATCATGATCATGATCACGGTCATGATCTTAAGCCCCCTCAGCCACCTCATATTTCCAGATTGCCCTCTGCCGCTGCAGGAGCAGACAAGCTACGGTCAACAAGTAATGGTAATGGAGGCTCGAAAAGGGAATTGGGTGGTCTCAAGGACGGAGCCGGTGTCCAAATTGCCGCTCAAACTTTTACTTTCCGTGAGCTTGCAGCCGCGACCAAAAACTTCAGGCAGCAGTCCTTCTTAGGGGAAGGTGGTTTCGGAAGGGTCTACAAGGGCCGCCTCGAAACCACGGGTCAGGTTGTTGCTGTTAAACAGTTGGACAGAAATGGTCTTCAGGGTAATCGGGAATTCCTTGTGGAGGTTCTCATGCTCAGTCTTCTACACCACCCTAATCTTGTGAATCTCATTGGATACTGTGCGGATGGGGACCAACGCCTCTTAGTTTATGAATTTATGCCATTGGGATCACTGGAAGACCACCTTCATGATCTTCCCCCTGATAAGGAGCCATTAGATTGGAACACCAGGATGAAAATTGCTGCTGGGGCAGCAAAAGGATTGGAATACCTTCACGACAAAGCAAATCCTCCCGTCATTTATAGAGATTTCAAATCATCTAATATATTACTTGATGAAGGTTATCATCCAAAGCTTTCAGACTTTGGTCTTGCAAAGCTTGGTCCTGTTGGTGACAAATCACACGTTTCCACCCGTGTCATGGGAACTTATGGTTACTGTGCTCCAGAATATGCTATGACTGGACAGCTGACTGTGAAGTCTGACGTATATAGTTTTGGGGTAGTCTTCCTGGAGCTGATTACTGGACGCAAAGCCATTGACAGCACCCGACCCCATGGAGAACAAAACCTTGTCACATGGGCACGTCCACTGTTCAATGACCGCAGGAAGTTTCCAAAGTTAGCAGATCCACAGCTGCAGGGGCGGTATCCCATGCGAGGTCTTTACCAAGCTCTAGCTGTGGCATCAATGTGCATTCAAGAACAGGCGGCAGCACGTCCTCTCATTGGAGATGTGGTGACAGCCCTTTCTTTTCTAGCCAACCAGGCGTATGACCATAGGGGAGCTGGTGATGATAAAAGGAACAGAGATGATAAAGGTGGAAGAATATTGAAAAATGATGAAGGTGGAGGATCTGGACGCAGATGGGATTTGGAAGGATCTGAGAAAGATGACTCCCCACGTGAAACTGCAAGGATTTTAAACAACAGGGATCTTGATAGAGAACGTGCCGTGGCTGAAGCCAAGATGTGGGGAGAGAACTGGAGAGAAAAAAGACGACAAAGTGCGCAGGGCAGTTTTGATGGTTCTAACGCCTAG 1404 0.4793 MGCFSCFDSREDEKLNPNPQQETHHHDHDHGHDLKPPQPPHISRLPSAAAGADKLRSTSNGNGGSKRELGGLKDGAGVQIAAQTFTFRELAAATKNFRQQSFLGEGGFGRVYKGRLETTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTRPHGEQNLVTWARPLFNDRRKFPKLADPQLQGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSFLANQAYDHRGAGDDKRNRDDKGGRILKNDEGGGSGRRWDLEGSEKDDSPRETARILNNRDLDRERAVAEAKMWGENWREKRRQSAQGSFDGSNA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0010 467 MobiDBLite consensus disorder prediction 1 72 - -
Ssu7g0010 467 Gene3D Phosphorylase Kinase; domain 1 81 173 - -
Ssu7g0010 467 MobiDBLite consensus disorder prediction 382 458 - -
Ssu7g0010 467 PANTHER OS07G0668900 PROTEIN 1 462 - -
Ssu7g0010 467 Gene3D Transferase(Phosphotransferase) domain 1 174 394 - -
Ssu7g0010 467 CDD STKc_IRAK 103 371 - -
Ssu7g0010 467 Pfam Protein kinase domain 98 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0010 467 ProSiteProfiles Protein kinase domain profile. 97 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g0010 467 MobiDBLite consensus disorder prediction 382 467 - -
Ssu7g0010 467 MobiDBLite consensus disorder prediction 7 37 - -
Ssu7g0010 467 PANTHER SERINE/THREONINE-PROTEIN KINASE PBS1 1 462 - -
Ssu7g0010 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Ssu7g0010 467 SUPERFAMILY Protein kinase-like (PK-like) 81 373 IPR011009 -
Ssu7g0010 467 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0010 Ssu-Chr7 115463 120430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0010 1 455 Glycoside Hydrolase AT3G07070 56.923 1.65e-173 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Ssu7g0010 Pkinase 2.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0010 K13430 - gmx:100777987 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0010 7 115463 120430 Ssu4g1069 4 17046925 17049853 ECH
Ssu7g0010 7 115463 120430 Ssu7g0010 7 115463 120430 ECH