Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0004 ATGGATTGGATTGAAAAGATAACAGGTGTTATTGCCTCATTGTTGAGTTCTCAGATTCCTGAAAGGTGTTTGCCTGCTAGTCCAATGGGAAGTGGTTATGATAGGTCTGCCAGTGAGAGTAGTTCTTTTGAAAGCTCAGACTTTGATCCCTCTGCTGTTGAAGAATATGCAATAGAGAGAAGTCTTGCTTCTGTACATCTTGAGTACCCCTCAAGGAGTTTGCAGCTGCAGCAATCCTGTACTAAAAGTGAGAAGCCAATTGATCTGTTACGAAGAGTTTGTGGGAATGATAGATGTGCTGATTGTGGTGCCCCTGAACCTGATTGGGCTTCACTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTTCACCGAAACCTTGGTGTGCATATACCAAGGTCAGGTCTCTCACACTGGATGTTAAAGTTTGGGAACCTTCTGTGA 450 0.4333 MDWIEKITGVIASLLSSQIPERCLPASPMGSGYDRSASESSSFESSDFDPSAVEEYAIERSLASVHLEYPSRSLQLQQSCTKSEKPIDLLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHIPRSGLSHWMLKFGNLL 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0004 149 Gene3D Arf GTPase activating protein 71 137 IPR038508 -
Ssu7g0004 149 SUPERFAMILY ArfGap/RecO-like zinc finger 84 135 IPR037278 -
Ssu7g0004 149 SMART arf_gap_3 84 149 IPR001164 GO:0005096
Ssu7g0004 149 ProSiteProfiles ARF GTPase-activating proteins domain profile. 84 136 IPR001164 GO:0005096
Ssu7g0004 149 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 134 - -
Ssu7g0004 149 PRINTS HIV Rev interacting protein signature 115 132 IPR001164 GO:0005096
Ssu7g0004 149 PRINTS HIV Rev interacting protein signature 96 115 IPR001164 GO:0005096
Ssu7g0004 149 Pfam Putative GTPase activating protein for Arf 87 133 IPR001164 GO:0005096
Ssu7g0004 149 PANTHER CENTAURIN/ARF 1 134 IPR045258 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0004 Ssu-Chr7 46402 51168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0004 70 135 C2H2 Transcription Factor Family AT3G07940 53.030 4.31e-18 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0004 K12489 - gmx:100798227 228.794